Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00075 ATGTCGTGGCAATCTTACATTGATGATCAATTGATGTATGATGTCGACGGCCATCATCTCCAAGCCGCTGCTATAATCGGTAACGACGGTGCTGTTTGGGCTCAGAGCCCTGCTTTCCCCAAGTTCAAGCCAGAAGAGATGTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCTCCGACTGGTTTGCACCTTGCTGGATCAAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGGCTCACTGTAAAGAAAACAAACCAAGCACTCGTTTTTGGGTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTCGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 396 46.72 MSWQSYIDDQLMYDVDGHHLQAAAIIGNDGAVWAQSPAFPKFKPEEMSAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGLTVKKTNQALVFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 421448 422929 + Carg04283-RA Car01g00075 140939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00075 131 CDD PROF 2 131 IPR005455 GO:0003779
Car01g00075 131 Pfam Profilin 1 131 IPR005455 GO:0003779
Car01g00075 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Car01g00075 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Car01g00075 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Car01g00075 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Car01g00075 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Car01g00075 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Car01g00075 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Car01g00075 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Car01g00075 131 PANTHER PROFILIN-A 1 131 - -
Car01g00075 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Car01g00075 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Car01g00075 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Car01g00075 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Car01g00075 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Car01g00075 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Car01g00075 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Car01g00075 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Car01g00075 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Car01g00075 131 SMART prof_2 1 131 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00075 Car17g00703 CCT
Car01g00075 Car08g00630 CCT
Car01g00075 Car17g00703 ECH
Car01g00075 Car08g00630 ECH
Car01g00075 Car14g01139 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00075 Car-Chr1:421448 Car12g01245 Car-Chr12:11761833 5.44E-65 dispersed
Car01g00075 Car-Chr1:421448 Car14g01139 Car-Chr14:10038186 1.21E-88 wgd
Car01g00075 Car-Chr1:421448 Car17g00703 Car-Chr17:6453074 4.38E-76 wgd
Car01g00075 Car-Chr1:421448 Car05g01288 Car-Chr5:11896092 3.85E-74 wgd
Car01g00075 Car-Chr1:421448 Car08g00630 Car-Chr8:4036191 4.57E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00075 K05759 - csv:101218089 248.825