Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00077 ATGGGAAAGGCGATGAGATTGTTGAGAGCCTTATTGGGAATGAGGAGAGACAAGAATGCCGATCACAACTCATGTTTGCCCGCCGATGGTGAAAACAAAGAGAGGAATCGGTGCAGTTTTTCAAAATCCGGGAAGGAATTCACCGGAGAAGTTCAGAAGCTGCCACCGCCGCCGAGAATGGCAGATGCTGATTGCCAGAGATCTTGTCATGCAGAGGAAGAGCGTAATGAACATGCGATCGCTGTCGCAGCAGCATCGGCTGCTGATGCTGCTGTGGCGGCGGCTCAAGCGGCGGTGGCGGTTGTTATGCTTACCAACCAAACTAGAGGAGGTGGTTTGTTCAATGGAGGGAAAGTGATTTCGGCTGCTCTTACAATTCAAAAGGTTTTCAGAGGCTTTTTGGCGAGGAAGGCACTTCAAGCATTAAGAAGTTTGGTCAAATTACAGGCTTTAGTTAGAGGCTTTCTCGTTCGAAAACGAGCAGCCGCCACATTACAGAGCATGCAAGCTCTAATCCGAGCACAAACCACCGTCCGATCGCAACGAGCTCGTCGTTCAAGCAACAAAGAGAACAAATCCCTGCCGGAAAAGTCTCCGGATATCGGCGACGTCAGATTTCTTTTCTCGGACGAAATCGAAGACCCCAAAATCGTGGAAATCGACAAACTATTCCAGAAACCCAAATCGAGGTCCCGGCATTTCAACAACCTCCTCTCGGAGCTTGCCGACGACCGGCCGTCGCCGTACCTCTGGACAATGGCGTCGCCGGCCAGATTCTCAGGCGGGGAGTGGTGTTTCACCGGCGGAGAGGAGTGTGGGAGGATGTCGACAGCCCAGAGCACGCCGCGTGTGCGGAACTACGGGTGGACGACGGCGGCGGCGGCGACAGCGACGCCGGCAAGGGTGGTATACGGCGAAGGGTTTTTCCGTCCGTTTACGAATTTTCCGAATTATATGGCGAGTACGAAATCGTTTAAGGCGAAATCGAGGTCGCGAAGCGCGCCGAAACAGAGGGCGGAGGGTTGGACGAAGAACAGAGTGGCGTTGAATGAGATTATGGGAGGCAGGAACAGCACCAGCGGCGTGAGAATGCAGAAATGTTGTCATCCGATTGAAGGAGATGAAGGGTTTGATGAGTTCTGA 1143 53.02 MGKAMRLLRALLGMRRDKNADHNSCLPADGENKERNRCSFSKSGKEFTGEVQKLPPPPRMADADCQRSCHAEEERNEHAIAVAAASAADAAVAAAQAAVAVVMLTNQTRGGGLFNGGKVISAALTIQKVFRGFLARKALQALRSLVKLQALVRGFLVRKRAAATLQSMQALIRAQTTVRSQRARRSSNKENKSLPEKSPDIGDVRFLFSDEIEDPKIVEIDKLFQKPKSRSRHFNNLLSELADDRPSPYLWTMASPARFSGGEWCFTGGEECGRMSTAQSTPRVRNYGWTTAAAATATPARVVYGEGFFRPFTNFPNYMASTKSFKAKSRSRSAPKQRAEGWTKNRVALNEIMGGRNSTSGVRMQKCCHPIEGDEGFDEF 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 426983 428214 - Carg04281-RA Car01g00077 140941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00077 380 MobiDBLite consensus disorder prediction 183 198 - -
Car01g00077 380 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Car01g00077 380 Pfam IQ calmodulin-binding motif 144 160 IPR000048 GO:0005515
Car01g00077 380 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Car01g00077 380 MobiDBLite consensus disorder prediction 179 198 - -
Car01g00077 380 ProSiteProfiles IQ motif profile. 121 147 IPR000048 GO:0005515
Car01g00077 380 Pfam Protein of unknown function (DUF4005) 281 351 IPR025064 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00077 Car17g00704 CCT
Car01g00077 Car08g00629 CCT
Car01g00077 Car17g00704 ECH
Car01g00077 Car08g00629 ECH
Car01g00077 Car14g01140 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00077 Car-Chr1:426983 Car14g01570 Car-Chr14:12821341 5.48E-33 dispersed
Car01g00077 Car-Chr1:426983 Car10g00607 Car-Chr10:3093336 7.22E-71 wgd
Car01g00077 Car-Chr1:426983 Car11g00535 Car-Chr11:2896851 6.13E-70 wgd
Car01g00077 Car-Chr1:426983 Car14g01140 Car-Chr14:10044241 4.66E-168 wgd
Car01g00077 Car-Chr1:426983 Car17g00704 Car-Chr17:6456875 6.26E-74 wgd
Car01g00077 Car-Chr1:426983 Car08g00629 Car-Chr8:4031350 9.19E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00077 - - csv:101221170 471.47