Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00079 ATGTTTTCGTCCATGAATCCTGTGCGAATTCGCACTTTGTTCTTCCTTCTCTACTTCTCCATTCTTCTTCAGCATCATTCCCTCTGTTCCTCATCTCCCTCGCCCTTAAGTTGTACAGATACAACCCGGTTATGCACCTCGTTTCTGGCTTTCAAGCCTCAGCCAAATCAGACGCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTCACTGTCGAAGGCAATGGCTGGGACTATGTGTTCATCAGGAAGAATTGCTCCTGTGCCTCTGGATTGAAGAAATACATCACCAATACCACTTTTACCATCAAATCGAATCGGGGTTTTGTGTATGACATAGTCTTGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAATACCACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGCGGCTGTTTTGTGCCTGTTCAAGTGGGCTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGCGATACCATTCAGTCTTTGGCTAGCCGATTTGGGGTCAGTATGGATAGCATTGAATCGGTGAATGGAATTCAAAATCCCAGCAATGTCACTGTGGGTGCTTTGTATTATATTCCCCTGAATTCGGTTCCTGGTGATCCTTATCCATTGGAGACCCACATTTCTCCTGCTCCTACTCCTGCTCCTTCCTATTCTCTCAACAATTTCTCAGATAATGCTGAGAACTCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTATTAGGCATAGGAGGTTATGCTTGTTGTAGGTGGTCGAAATGCTTTTCTAGATTAAGAAGTAGCCACTCCAAAGATCCTGGTGCCAAGGTTTCACACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGTAGTTCTGCAGATTGGAAACAACCCAGCACAGAGTCGAGCGATAACCAGAGTGCAATTCCAAAAGCTATTGAGAGCAATGTATTCAATGTAGACAAACCTGTGGTTTTCTCCTGCGAAGAAATATTTTCCACGACCGATGGTTTCTCCGAGTCGAGTCTGCTTGGCCATGGAACTTATGGTTCAGTGTATCATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAGAGAATGACTGCAACAAAAACTAAAGAGTTTCTGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCAAACCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGCGGAGCTCTTTCTTATTTATGAATATGCTCAAAAAGGTCCACTCAAAAGTCATTTACATGATCCTCTGAACAAGGGCCATACATCACTGTCTTGGATTATGAGACTCCAAATTTCTTTGGACGTTGCGAGAGGTCTCGAATACATTCACGAGCACACTAAACCTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCATTTAGAGCGAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACTAATGAGGGTGAAGCTACTGTAACGAAAGTTGTGGGTACATATGGCTATCTGGCTCCTGAATATTTGAGTAACGGACTTGCTACAACTAAAAGCGACGTGTACGCATACGGTGTTGTTCTTTTTGAGCTTATATCGGGAAAGGAGGCAATCATACGAACTGAGGGCACGACTTTGAAAAATCCTGAAAGACGTTCGTTGGCATCCATTATGCTTGGTGTTGTTGGTAACACACCTGATCCTATGAATATGGGAAGTCTAAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTCAAGGTGGCGATGTTGGGAAAGCAGTGTGTGGATGAGGATCCCATGTTACGACCGGACATGAAGGAAGTGGTGATATCGTTGTCACAGATCCTACTGTCTTCAATAGAGTGGGAAGCGACACTAGCTGGTAACAGCCAAAGCAGCGCCTCGCTCGAGAATGCACTCGGTAAAGTCGTGTTCCTGGATATGGGGCTACGGTGTTGA 2049 44.22 MFSSMNPVRIRTLFFLLYFSILLQHHSLCSSSPSPLSCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGWDYVFIRKNCSCASGLKKYITNTTFTIKSNRGFVYDIVLEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIQSLASRFGVSMDSIESVNGIQNPSNVTVGALYYIPLNSVPGDPYPLETHISPAPTPAPSYSLNNFSDNAENSKRHPPYIWIVGSLGIILVLILLGIGGYACCRWSKCFSRLRSSHSKDPGAKVSHKFHILGKSSFCCASGRYICCSSADWKQPSTESSDNQSAIPKAIESNVFNVDKPVVFSCEEIFSTTDGFSESSLLGHGTYGSVYHGILRDQEVAIKRMTATKTKEFLAEMKVLCKVHHANLVELIGYAASEAELFLIYEYAQKGPLKSHLHDPLNKGHTSLSWIMRLQISLDVARGLEYIHEHTKPHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTLKNPERRSLASIMLGVVGNTPDPMNMGSLKDQVDPSMMDLYPHDCLFKVAMLGKQCVDEDPMLRPDMKEVVISLSQILLSSIEWEATLAGNSQSSASLENALGKVVFLDMGLRC 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 436340 440297 + Carg04279-RA Car01g00079 140943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00079 682 Pfam LysM domain 159 196 IPR018392 -
Car01g00079 682 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Car01g00079 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Car01g00079 682 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00079 682 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
Car01g00079 682 Pfam Protein tyrosine and serine/threonine kinase 364 640 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00079 Car-Chr1:436340 Car04g01787 Car-Chr4:10210139 7.34E-118 dispersed
Car18g00821 Car-Chr18:9269312 Car01g00079 Car-Chr1:436340 6.52E-47 dispersed
Car01g00079 Car-Chr1:436340 Car14g01142 Car-Chr14:10060333 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88574 PF07714 PK_Tyr_Ser-Thr 1.40E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00079 - - csv:101213624 1163.67