Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00093 ATGGCGGAGAAGGGCGATGTTGAGATGGAGGAGGTTGACGATGGCAGCGGAGAAGTGCGGCGGGATGATGCGGCGGAGGTTAGTAGCGAGAATTTGGGACCGGTGAGATCGAGATCGGACGACGATTTCGAGGGCGGAGGTGTGCATGAGGAAAATGAAGAGGGGGATGGTGGATGTCTTGTAAAGAGAAGGAAGAAATATCATCGGCATACCACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCTCACCCAGATGAGAAGCAAAGGCAGCAGCTTAGCAAGAGATTAGGGCTTTCACCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAAGCTATTCAAGAGCGCCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAAATAAAGCCATGAGAGAACTTACCAAGAAAAAAGTTGGCTGTCCAAATTGTGGCACTGCCAACGCTGCTGAAGACCATACCGCCTTCACAACTACGGAGCAATTGCGTATTAAGAATGCTAAGCTCAAAGCCGAGGTTGAAAAATTACGAGCAGCACTCGGAAAACACTCGCAATCATCGATCTCACCTTCATATTCGTCCGGGAACGACCAAGAGACAAACCGAAACTGCTTAGATTTTTACACTGGAATTTTCGGCCTTGAAAAGTCGAGGATCATGGAGAGGGTTCATCAAGCTCTCGAAGAGCTCAAAACAATGGCTGCCACAAACGAGCCGCTTTGGATCCGTAGTATCGAGACAGGACGAGAGATTTTAAACTACGACGAGTACTTGAAAACGTTCCATGTCAAGAATTCAAATGCTTGTTGGCTCAAAAGACATATCGAAGCCTCTCGAGACACGACCGTCGTCTTCATGGAGCCCTCGAGGTTGATCCAAAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTCCATGATCTCAAAGGCAGCTACAATTGATGTTATTTGTAATGGAGAAGTTGCCAATTGGAATGGCGCAGTGCAATTGATGTTTGTGGAGGTGCAGCTGCTTACACCATTGGTGCCCACAAGAGAAATCTATTTTATACGTCATTGTAAGCAGCTCGACGCTGAACTATGGGCGATCGTCGATGTTTCGATCGACAACGTTGATGATACTAATATGGATGCTTTGTTGATGAAGTATAGAAAACGTCCTTCTGGTTGCATCATTAAGGATGAATCTAATGGCCATTGCAAGGTAACGATGGTGGAGCATTTGGAATGTGAAAAAACCAAAGTTCATAACTTGTACCGCACCATAGTCAACAATGGCACTGCCTTTGGAGCAAGACATTGGATGGCAACGCTTCAACTCCAATGCGAACGCCTTGCTTTCTTTATGGCCACCAACATCCCCATCAAAGACTCAACTGGAGTTGCAACTCTGGCCGGAAGAAAAAGCATTTTGAAGTTGGCAGAGAGAATGAGTTCAAGCTTCTCCCAAGCAGTGGCAGCTTCAAGTTACCAAACATGGACCAAAGTTGTGGGCAAAACAGGGGAAGACATTAGGGTTTGTTCCAGGAAAAATCTAAGTGACCCTGGTGAACCCATTGGTGTTATTTTATGTGCAGTTTTTTCTCTATGGTTGCCTGTTCCTCCCCACACTCTCTTCCATTTCTTGCGAGACGATGCTCGAAGAAACGAGTGGGACGCCATGTTTGGTGGAGATAAAGTTGAGTCAATTGCAAATTTGGCTAAAGGGCAGGATCGAGGCAACTCAGTTAGTATTCAAACAAGAGGATCAAAAGAGAGCAGCAGCATGTGGATTCTCCAAGACGCCTCCACAAACTCCTCGGAATCCATGGTAGTCTACTCCGGAGTAGACGTTTCCGGCATGCAGTCGGTGATGACAGGCTGTGATTCCGGCAGCCTCACAATCCTCCCATCGGGCTTTTCAATTCTCCCCGACGGCGCTGAGTCCAGGTCCCTCCTCATTACTCGCCAGAAAGACCACAAATCTTCGGACACCCATGGTGGCGCTCTGCTGACCGCCGCCGTCCAAATTGTGACCGACGCCTCTCCCTCTGCAAAACCCACGGTGGATTCGGTTGAGTACGTTAAAAGCATCGTTTGTTGTACGATGAAAAATATCAGAAGCAGCCTGGGATGCTGTGAGGATGATTGTTGA 2178 47.25 MAEKGDVEMEEVDDGSGEVRRDDAAEVSSENLGPVRSRSDDDFEGGGVHEENEEGDGGCLVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREENKAMRELTKKKVGCPNCGTANAAEDHTAFTTTEQLRIKNAKLKAEVEKLRAALGKHSQSSISPSYSSGNDQETNRNCLDFYTGIFGLEKSRIMERVHQALEELKTMAATNEPLWIRSIETGREILNYDEYLKTFHVKNSNACWLKRHIEASRDTTVVFMEPSRLIQSFMDENQWKEMFPSMISKAATIDVICNGEVANWNGAVQLMFVEVQLLTPLVPTREIYFIRHCKQLDAELWAIVDVSIDNVDDTNMDALLMKYRKRPSGCIIKDESNGHCKVTMVEHLECEKTKVHNLYRTIVNNGTAFGARHWMATLQLQCERLAFFMATNIPIKDSTGVATLAGRKSILKLAERMSSSFSQAVAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVFSLWLPVPPHTLFHFLRDDARRNEWDAMFGGDKVESIANLAKGQDRGNSVSIQTRGSKESSSMWILQDASTNSSESMVVYSGVDVSGMQSVMTGCDSGSLTILPSGFSILPDGAESRSLLITRQKDHKSSDTHGGALLTAAVQIVTDASPSAKPTVDSVEYVKSIVCCTMKNIRSSLGCCEDDC 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 493244 497232 + Carg04265-RA Car01g00093 140957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00093 725 MobiDBLite consensus disorder prediction 35 59 - -
Car01g00093 725 Pfam START domain 238 459 IPR002913 GO:0008289
Car01g00093 725 Coils Coil 120 150 - -
Car01g00093 725 Coils Coil 172 199 - -
Car01g00093 725 MobiDBLite consensus disorder prediction 1 59 - -
Car01g00093 725 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Car01g00093 725 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Car01g00093 725 ProSiteProfiles START domain profile. 225 462 IPR002913 GO:0008289
Car01g00093 725 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00093 Car-Chr1:493244 Car17g00018 Car-Chr17:71992 0 dispersed
Car01g00093 Car-Chr1:493244 Car14g01153 Car-Chr14:10146694 0 wgd
Car01g00093 Car-Chr1:493244 Car08g00597 Car-Chr8:3874810 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2772 PF01852 START 5.10E-50 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00093 K09338 - csv:101221341 1166.37