Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00123 ATGGCGCACATTCTGCTTCATGGCACCCTTCATGTCACCATTTATGAGGTGGATAAGCTTCACTCCGGTGCTCGCAATTTCTTGAAATCGTTGGTTGAAAACGTAGAGGAAGCTGTGGGGTTTGGCAGAGGAGTAACGAGGCTGTACGCCACCATTGATTTAGAGAAGGCCAGAGTTGGAAGAACAAGAAGACTCGAGAAAGAACATTCAAATCCAAAATGGTACGAAACTTTCCACATCTACTGTGCTCACATGGCTTCCAACATCATCTTCACTGTCAAAGACGACAATCCCATTGGAGCAACCTTAATCGGCAGAGCATATTTGCCTGTCAAAGAGATCATAAGCGGTGAAGAAGTTGACCAATGGGTTCCTATCTTGGACGAACGCAAGAAGCCGATTCGTGGAGACCCCAAAATTCATGTCAAATTACAATACTTCGATGTCACCAAGGATCAAAACTGGGGTCGTGGCATCAAAAGCTCCAAGTTTCCTGGAGTTCCCTACACTTATTTCTCTCAACGACAAGGTTGTAAGGTAACTTTGTACCAAGATGCTCATGTTCCTGACAACTTTATCCCCAAAATTCCTCTTGCTGGTGGCAAGTTTTATGAGCCAAATAGATGTTGGGAAGATATTTTTGATGCAATTATTAATGCTAAACACATGATTTACATTACTGGTTGGTCTGTTTACACTGAGATTTCTTTGGTGAGAGATAAAAGAAGGCCAAAGCCCGGTGGAGATATGATGCTTGGTGAATTGCTTAAGAAAAAAGCAAATGAAGGAGTTAGAGTTCTTTTGCTTGTTTGGAATGATACTACTTCTGTGCCTATCCTGAAGGAGGACGGGCTAATGGCTACACATGATGAAGATACTGCTAAGTTCTTTGCTAATACTGATGTGCATTGTGTTCTGTGTCCTCGCAATCCTGATGATGGGGCTAATGTTATTCAGGATATTGCCGTTGGGACAATGTTTACTCATCATCAAAAGATTGTTGTTGTGGACAGTGCTTTGCCTAATGGAGATCCAAATCGAAGGAGGATTGTGAGTTTTGTTGGTGGGATTGATCTTTGTGATGGTAGATATGATACTCCATTTCATTCCCTTTTCAGGACTTTGGATTCAGCCCATCATGATGATTTCCATCAGCCAAACTTCACCGGTACTTCCATAAACAAAGGTGGTCCGAGAGAGCCATGGCACGATATCCATTCCCGCCTTGAAGGACCGGTTGCGTGGGATGTTTTGTACAACTTTGAGCAGAGGTGGAGGAAGCAAGGTGGAAAGGATTTGCTTGTGAAATTAAGGGAGTTGGATGCCATCTTCATCCCTCCATCACCTGTCATGTTCCCTGATGACTTTGATAGTTGGAATGCTCAAGTTTTCAGGTCCATCGATGGCGGGGCGGCTTTTGGCTTCCCCGACTCGCCCGAAGAAGCAGCCAAAGCTGGACTTATAAGTGGAAAGGACAATATTATTGATAGAAGCATCCAAGATGCTTACATTAATGCCATTAGAAGAGCAAAGAATTTCATATACATTGAAAATCAGTATTTCCTTGGAAGCTCGTTTGAATGGAGAGGTACTGATGTGAAGCCGGAGATGATCAATGCCCTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTGAGTAAGATTGAAGCTCGAGAGCGGTTCACTGTGTACGTCGTCGTCCCGATGTGGCCGGAAGGATTCCCAGAGGGGGGAACAGTTCAAGCTATATTAGATTGGCAAAGAAGAACAATGGAGATGATGTATAAAGATATAGCTCTAGCCCTTAGAGTTAATGGCATCGAAGAGGATCCTAGAAACTATCTGACTTTCTTTTGTGTAGGCAATCGCGAAGTTAAGAAGCCTGGAGAATATGAACCATCAGAATCCCCTGATGAAAATTCCAGTTACCTTAGAGCCCAACAAGCCAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATCGTTGATGATGAATACATAATAGTGGGATCAGCCAACATCAACCAAAGATCAATGGATGGTGCAAGGGACTCAGAGATAGCCATGGGAGCTTACCAGCCATTTCATCTGTCATCAAGAGAGCCAGCAAGAGGCCAAGTCCATGGCTTCCGCATGGCATTATGGTTTGAACATTTAGGATTACTCCATGACTCCTTCCTCTTTCCAGAAAGCATTGAGTGTGTAACAAAAGTTAACCAACTTGCTGATAAATATTGGGACCTATACTCAAGTGAAACCTTTGAACACGACCTTCCCGGCCACCTGCTTCGCTACCCGATCAGCATCTCCGGTGACGGTGAAATTACCGAGCTTCCCGGGTTCGAGTTCTTCCCGGATACTAAGGCGCGAGTCCTAGGTAACAAGTCTAATTATCTCCCTCCGATCCTCACTACTTAA 2424 43.98 MAHILLHGTLHVTIYEVDKLHSGARNFLKSLVENVEEAVGFGRGVTRLYATIDLEKARVGRTRRLEKEHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVKEIISGEEVDQWVPILDERKKPIRGDPKIHVKLQYFDVTKDQNWGRGIKSSKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPKIPLAGGKFYEPNRCWEDIFDAIINAKHMIYITGWSVYTEISLVRDKRRPKPGGDMMLGELLKKKANEGVRVLLLVWNDTTSVPILKEDGLMATHDEDTAKFFANTDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKIVVVDSALPNGDPNRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDSAHHDDFHQPNFTGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLVKLRELDAIFIPPSPVMFPDDFDSWNAQVFRSIDGGAAFGFPDSPEEAAKAGLISGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWRGTDVKPEMINALHLIPKELSLKIVSKIEARERFTVYVVVPMWPEGFPEGGTVQAILDWQRRTMEMMYKDIALALRVNGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPDENSSYLRAQQARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPFHLSSREPARGQVHGFRMALWFEHLGLLHDSFLFPESIECVTKVNQLADKYWDLYSSETFEHDLPGHLLRYPISISGDGEITELPGFEFFPDTKARVLGNKSNYLPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 625607 629892 + Carg04233-RA Car01g00123 140987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00123 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Car01g00123 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Car01g00123 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Car01g00123 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Car01g00123 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Car01g00123 807 Pfam C2 domain 8 126 IPR000008 -
Car01g00123 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00123 Car08g00568 CCT
Car01g00123 Car08g00568 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00054 Car-Chr1:297088 Car01g00123 Car-Chr1:625607 0 dispersed
Car01g00123 Car-Chr1:625607 Car08g00568 Car-Chr8:3743854 0 dispersed
Car01g00123 Car-Chr1:625607 Car08g00824 Car-Chr8:5496173 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00123 K01115 - csv:101215246 1571.21