Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00165 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCGAAACCTGCATCTGCTATAAATGTTAGGGAGGCTGTTAATAATAGGCCATCGGCCTCTGGAAGGGTGCCATTTCAAGGTGTGGATGTTTTAGGTCTGAAGAAGCGAGGCCAGGGACTAAGATCTTGGATCCGGGTAGATTCTTCTGGGAACTCCCAGATTATTGAGATCGATAAGTTCACTGTGATGCGTCGTTGTGATCTCCCTGCACGTGATTTGCGCCTGCTTGACCCTTTGTTTGTTTACCCTTCCACCATTCTTGGTAGAGAGAAGGCTATTGTGGTCAATCTGGAGCAAATTCGATGCATCATAACAGCCGAAGAAGTTCTGCTGTTAAATTCCCTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGACGTTTGAAAACCACTGGGGTCGATGAGGTTTGGCAAAATGATGGAAATCATGGAGCTGACTTAAATCGAAGAAGAGGAAGTAGGAATTTTGATAATTTATTTGCAAACACCACCTCTCCTGATTATTTGCCCTTTGAGTTCAGGGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATATCCATTGCTAGATGAACTTACGTCGAAAATCAGTACATTAAATTTGGAGCGTGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGCGATCAGTCTGTGACTGGATACAGGCCAATCGATGGAGCATCTATTTCAGCTCCTGTTTCTCCTGTATCTTCACCGCCCGAAACTCGGAAGCTTGAGAAGAGCCTTAGCATTGCAAGGAGTCGGCACGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAGTATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTAGTCATCGACAGCACTTTGAACAAGTTGACATCGTTGAAGGAGTACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAGTTTGAGCTACTGCTCACAACTGCAACATTCGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATATTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGTAAGTGGGATTATCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1347 43.21 MADLKERLLPPKPASAINVREAVNNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEIDKFTVMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNLFANTTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVTGYRPIDGASISAPVSPVSSPPETRKLEKSLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPDAFKWVLLITGVSGIIIFSAFVWFFRYKRLMPL 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 864890 867860 - Carg04191-RA Car01g00165 141029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00165 448 CDD Mrs2_Mfm1p-like 53 445 IPR039204 -
Car01g00165 448 Pfam CorA-like Mg2+ transporter protein 337 436 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Car01g00165 448 Gene3D - 41 124 - -
Car01g00165 448 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 448 IPR039204 -
Car01g00165 448 Coils Coil 229 256 - -
Car01g00165 448 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 448 - -
Car01g00165 448 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 385 438 IPR045863 -
Car01g00165 448 Gene3D Magnesium transport protein CorA, transmembrane region 386 446 - -
Car01g00165 448 Gene3D Magnesium transport protein CorA, transmembrane region 125 379 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00165 Car14g00950 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00165 Car-Chr1:864890 Car11g01150 Car-Chr11:9219259 1.42E-116 dispersed
Car12g00100 Car-Chr12:537639 Car01g00165 Car-Chr1:864890 9.26E-148 transposed
Car13g00204 Car-Chr13:2282863 Car01g00165 Car-Chr1:864890 1.29E-06 transposed
Car01g00165 Car-Chr1:864890 Car14g00950 Car-Chr14:5749064 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00165 K16075 - csv:101217419 811.986