Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00168 ATGGAGAAGAAGACTTATCCGATTGGGGAAGATTCTTATGTTCTGTACGAGGAGGTTGGGCAGGGGGTGAGTGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAGATCGTCGCCATCAAGATCCTCGATTTTGAGCGTGAGAATTGTGATCTGGTTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCACCCAAATGTTCTTAAATCACACTGCTCCTTTGTCAATGGACATAATTTGTGGATTGTTATGCCATACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTGATAGCAACAATATTACGAGAAGTGTTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGACTCAGGTGATAGGCAACGTGTGAGGAATACATTCGTGGGCACACCATGCTGGATGGCACCTGAAGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCTATAACTGGGTTAGAGCTTGCCCATGGTCATGCTCCTTTCTCAAAATATCCTCCGATGAAGTCTTTTAAGCAGATGATTGCGAGTTGCTTGGTGAAAGATCCTTCAAAACGACCTTCTGCAAGTAAACTGCTAAAGCATTCATTTTTTAGGCAAGCCCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGAAAGAAGGAAGAATTATCTCAGAATGAATATAAACGAGGAATCAGTGGATGGAATTTCAATCTTGATGATTTAAAGGCTCAGGCATCTCTGATTCAGGAATTTGAAGAATCCATAAGTGAAATCAGTGAAGTAGGGAGCTCCAGTAACTTATCTTCTCTTGATGTGCAAGAAAGGAAATTACAATATCAAAATTCTTCAGAACTTTCAGATACTGAAGAGAATGGCATGTTGCGGAGACTACCCTCCATGAAAGCTAATGATTCATTAGATGGTAAAAGATCTATGAATGATTCAACAATTCTTGGTCCTTGCTCCCAACAACATTCTTCGCCTCGCAATGATAATCAAACTGAGAATGGTTCCTGTGAAGAGCTTCCTTTGGAGAACAGCAAAAGAATACTGGGGAGTACTCCTAATTCTAGTCAACATAAAAGAAATGTTTCTTCCAATAACACCGTTCAACAAGAAACCACTTCACCTCTGAACAGAAGAGAGAGTTACGAGTCAGAAAAGAGTGTTGCAAATGGCAGTGTTGCAATTGGAATAACTTCTCAAGCTATAGATGATGTGCTTTCTGATTCTTATTCTAAAGATCCGAAGTCAACATTAGTAAGTCCAGCAACAAATGACGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACCTCGGAGAATGTTGATGTAGACAAGGCAGTTGCACCCCCTCTTCTGCAAAAAAGTCACAGTATGCAGGTTGGTAATTTTGAGGTGATTACCTCAAATTCTGCTACTCCTCTTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCCTCATCTGATGCTATACCAATTAACACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAACGGGAGGATATTTTGAATCTAATGAGGCAAATCTCAATCGGAGATTTTCCAGCCGATGGTGTGGCTGATGTCTCATCGGCACAGATAACAACTGAGAAATCTTTGCTTGAGGCAGCTCATGAAAGGGAAAAGGATTTACTCAACGAAGTAACTGAATTACAGTGGAGACCTCTCTTCCTTCTCCTCCTCTTTCACTCTCTGCTTTTCACCCCAACTCTTACACTTCACCATAACTCCTTGCTCTCTGATAAAGCAGCCCTCCTGGCCTTCAGGAACTCCATCATTCTTGATCCCACTTCCGCTCTCGCTAACTGGATCCACCCTGTTCATGTCTGCAACTTCACCGGTGTTGCTTGTGACCGACATCGTCGCCGAGTATCCAAGCTCACTCTCATTGACCTTGGACTTGTGGGAAACATCTCACCCTTCCTCTCCAATCTCACCGGTCTTCGAATTCTGGAAATCGCCAACAATGATCTGTTTGGGGGAATTCCTTCTGAGCTCTTCTCTCTTCAAAATCTTCGTCGTCTTCGCCTCAGTAGCAACGGATTAGAAGGTCCCATACCGAGTTCCTTTGCGAGTTTGTCCAAACTTACTGTCATAAGCCTTATGCTGAACAAGCTAAATGGGACAGTTCCACCCTCTTTCTTTTCTAATTGCACGTCGTTGCATAATGTGGACCTTTCCAACAACTTCCTGACAGGAAGGATTCCAGAAGAAATAGGAAATTGTCCAAATCTGTGGAATCTCAATATTTACAACAACCAGTTCAATGGAGAGCTTCCTCTTTCTTTAACAAACACGTCACTCTATAACTTGGACGTCGAATATAATCATCTTTCAGGCGAACTACCTTCGGCGCTCGTGGAAAACCTGCCTGCAATTAGCTTCCTTCATTTATCAAATAATGATATGGTAAGCCATGGTGGAAATACCAATCTCGAACCATTCATTATGTCGCTTAGAAACTGCAGTAGTTTAGAGGAGCTTGAATTCGCTGGGATGGGGCTTGGAGGGAGGCTGCCTGATTCTATTGGCTATCTGGGAGTCAATTTTTCAGTTTTGTCTTTGCAGGAAAACCAAATATTTGGATCAATCCCTCCAAGTTTGGCGCAGCTTTCCAAACTTGCAGGGCTGAATTTGACATCAAATCTACTTAATGGAACAATTCCAGCAGACATAAGCAAGTTGTCTAAATTGGAGCAGCTGTTCTTATCACATAACCTCTTTACTTCAGGCATTCCAGAAGCATTAGGCGAGTTAGAACATCTTGGTTTGTTGGATCTATCTCACAACCAACTTTCAGGTGAAATCCCAGAAAGTATTGGAAACTTGTCTCAGATGAACTATTTGTTTCTCAACAACAACTTCTTGTCAGGAACAATACCTTCAGCATTGGGAAAGTGCACAGGTCTTTATAAGCTGGACTTATCCTTCAACATGTTGTCAGGAAGCATTCCTCAAGAGATAATAGGCTTGCAAGAGATAAGAATTTTTATTAACCTTTCTCATAACAATCTTCAAGGAATTTTGCCCATTGAGCTTAGCAAGCTGAAAAACGTTCAAGAGATCGACTTTTCGTCCAATAACCTCACCGGAAGCATCTTCCCTCAGATATCAAGTTGTATTGCACTGAGGTTTATAAATTTTTCAATGAATTCCCTCCAAGGTCACCTTCCAGATTCCCTAGGTGAACTTGAGAACCTTGAATCATTTGATATTTCAAAAAACAAAATGTCAGGCATGATTCCAGCCAGTCTTGGTAAGCTCCAATCCCTCACCTATCTGAATCTTTCATTCAATAACTTCGAAGGAATGATTCCAAGAGAGGGTTTTTTCAAATCATCTACACCCTTGTCATTTATGAACAATCCACTACTTTGTGGAACAATTCCTGGAATACGAACCTGTTTTGGCGAGAGAAATCGGTTTCAGTCACCTCTATTCTTGACTATATTCATCTTAATCATATGCATATCATCATTCTTAACAACACTATGCTGTGGGATTGCTTGTCTACGTCTAAAAGCAATTATTTCGATACGAAATAGTGAGTCGTCAAGGAGATCCAAGATGCCAGATTTTACACACAATTTTCCAAGAATAACAAGCAGGCAACTATCAGAAGCCACAGGAGGTTTTGATGAACAGAGACTAATCGGTTCAGGCAGCTATGGACGAGTCTACCGAGGTGTTCTTCCAGATAGAACAACAGTAGCTGTTAAGGTTTTACATACGCAATCTGGAAATTCCACAAAGAGCTTTAACAGAGAATGTGAAGTTTTGAAGCGAATTCGCCACAGAAACCTTATAAGAATAATAACAGCTTGTAGTCTACCAGATTTTAAAGCCCTAGTTCTACCCTACATGGCAAATGGAAGCTTAGATAGGCACCTATATCAACATTCACCAGCCAGCTTGGCTTATGGTTCTTCAGATTTAAGCCTCATCCAGAGGGTAAATATATGCAGTGATATAGCTGAAGGAATGGCATACCTTCACCACCACTCTCCAGTCAGAGTCATACACTGCGATCTAAAGCCGAGCAATGTTCTTCTAAAAGACGACATGACAGCTCTAGTTTCTGACTTCGGAATCTCGAGGCTGATGACTCCTGGAATTGGAAGTGGGGCAGCTGCTGAAAACATGGGAAAGTCAACTGCAAGCATTCTAACTGGATCAATTGGATATATAGCACCAGAATACGGATTTGGTTCATCAGCATCCATGGAAGGAGACGTTTACAGCTTTGGAGTTCTAGTTTTGGAAATGGTGACAAGAAAAAGACCAATAGACGACATGTTCGTTGAAGGGCTGAATCTACATAAGTGGGTGAAGAGTCATTACTACAGCAGAGTAGAAAAGGTAGTGGATTCTTTTCTACAGAGAGATTCGAGAGATCAATCACCTGAAATGAAGAAAATGTGGGAAGTGGCAATCCGAGAGCTAATCGAATTGGGTTTGCTCTGCACTCAACAATCTCCATCCACGAGACCCACAATGCTCGATGCTGCCGATGACTTGAATCGATTGAAGAGATATCTTAATGATGGCGACACCACAACAACATTTGCTTCATCGCTTGGAATTTCTTCCTCCACGCTTGGCGACGACTCCAATTACTCCCCACAAATCGCCATCGACAGAAACATCTAA 4965 41.57 MEKKTYPIGEDSYVLYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLVSIYREVQTMILVDHPNVLKSHCSFVNGHNLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKSFKQMIASCLVKDPSKRPSASKLLKHSFFRQARSSDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSSNLSSLDVQERKLQYQNSSELSDTEENGMLRRLPSMKANDSLDGKRSMNDSTILGPCSQQHSSPRNDNQTENGSCEELPLENSKRILGSTPNSSQHKRNVSSNNTVQQETTSPLNRRESYESEKSVANGSVAIGITSQAIDDVLSDSYSKDPKSTLVSPATNDEEQDEKAKVPVIQQKGRFKVTSENVDVDKAVAPPLLQKSHSMQVGNFEVITSNSATPLLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQREDILNLMRQISIGDFPADGVADVSSAQITTEKSLLEAAHEREKDLLNEVTELQWRPLFLLLLFHSLLFTPTLTLHHNSLLSDKAALLAFRNSIILDPTSALANWIHPVHVCNFTGVACDRHRRRVSKLTLIDLGLVGNISPFLSNLTGLRILEIANNDLFGGIPSELFSLQNLRRLRLSSNGLEGPIPSSFASLSKLTVISLMLNKLNGTVPPSFFSNCTSLHNVDLSNNFLTGRIPEEIGNCPNLWNLNIYNNQFNGELPLSLTNTSLYNLDVEYNHLSGELPSALVENLPAISFLHLSNNDMVSHGGNTNLEPFIMSLRNCSSLEELEFAGMGLGGRLPDSIGYLGVNFSVLSLQENQIFGSIPPSLAQLSKLAGLNLTSNLLNGTIPADISKLSKLEQLFLSHNLFTSGIPEALGELEHLGLLDLSHNQLSGEIPESIGNLSQMNYLFLNNNFLSGTIPSALGKCTGLYKLDLSFNMLSGSIPQEIIGLQEIRIFINLSHNNLQGILPIELSKLKNVQEIDFSSNNLTGSIFPQISSCIALRFINFSMNSLQGHLPDSLGELENLESFDISKNKMSGMIPASLGKLQSLTYLNLSFNNFEGMIPREGFFKSSTPLSFMNNPLLCGTIPGIRTCFGERNRFQSPLFLTIFILIICISSFLTTLCCGIACLRLKAIISIRNSESSRRSKMPDFTHNFPRITSRQLSEATGGFDEQRLIGSGSYGRVYRGVLPDRTTVAVKVLHTQSGNSTKSFNRECEVLKRIRHRNLIRIITACSLPDFKALVLPYMANGSLDRHLYQHSPASLAYGSSDLSLIQRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLKDDMTALVSDFGISRLMTPGIGSGAAAENMGKSTASILTGSIGYIAPEYGFGSSASMEGDVYSFGVLVLEMVTRKRPIDDMFVEGLNLHKWVKSHYYSRVEKVVDSFLQRDSRDQSPEMKKMWEVAIRELIELGLLCTQQSPSTRPTMLDAADDLNRLKRYLNDGDTTTTFASSLGISSSTLGDDSNYSPQIAIDRNI 1654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 878041 888968 + Carg04187-RA Car01g00168 141032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00168 1654 MobiDBLite consensus disorder prediction 355 467 - -
Car01g00168 1654 ProSiteProfiles Protein kinase domain profile. 1317 1618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00168 1654 ProSiteProfiles Protein kinase domain profile. 13 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00168 1654 Coils Coil 639 659 - -
Car01g00168 1654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1444 1456 IPR008271 GO:0004672|GO:0006468
Car01g00168 1654 Pfam Leucine rich repeat 957 1012 IPR001611 GO:0005515
Car01g00168 1654 ProSitePatterns Protein kinases ATP-binding region signature. 1323 1345 IPR017441 GO:0005524
Car01g00168 1654 Pfam Protein kinase domain 1318 1607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00168 1654 Pfam Protein kinase domain 13 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00168 1654 MobiDBLite consensus disorder prediction 487 502 - -
Car01g00168 1654 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Car01g00168 1654 MobiDBLite consensus disorder prediction 487 512 - -
Car01g00168 1654 MobiDBLite consensus disorder prediction 426 456 - -
Car01g00168 1654 Pfam Leucine rich repeat N-terminal domain 685 723 IPR013210 -
Car01g00168 1654 MobiDBLite consensus disorder prediction 386 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00168 - - - csv:101211325 1647.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00168 Car-Chr1:878041 Car02g00868 Car-Chr2:6228996 1.25E-10 dispersed
Car15g00143 Car-Chr15:782208 Car01g00168 Car-Chr1:878041 9.91E-08 dispersed
Car01g00168 Car-Chr1:878041 Car14g00948 Car-Chr14:5705162 1.14E-08 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g01040 CST 1 691 MAP Kinase Kinase Kinase Kinase AT1G53165 62.3 1.7e-222 769.6
Car09g00765 CST 1 718 MAP Kinase Kinase Kinase Kinase AT1G53165 59.2 2.2e-214 742.7
Car18g01016 . 268 533 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 1.0e-67 255.4
Car01g01040 CST 1 690 MAP Kinase Kinase Kinase Kinase AT3G15220 64.1 3.1e-229 792.0
Car09g00765 CST 1 717 MAP Kinase Kinase Kinase Kinase AT3G15220 60.6 6.3e-222 767.7
Car18g01016 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 50.9 1.4e-67 255.0
Car18g01016 . 4 843 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 6.4e-242 834.3
Car01g01040 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 7.2e-68 256.1
Car09g00765 CST 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.6 9.4e-68 255.8
Car15g00325 CST 1 687 MAP Kinase Kinase Kinase Kinase AT5G14720 63.1 4.2e-239 824.7
Car04g02610 CST 1 434 MAP Kinase Kinase Kinase Kinase AT5G14720 61.1 3.7e-166 582.4
Car16g01156 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.1 8.6e-246 847.0
Car06g00521 CST 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 7.3e-245 844.0
Car04g02610 CST 6 318 MAP Kinase Kinase Kinase Kinase AT4G24100 55.0 1.5e-112 404.4
Car16g01156 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.5 6.3e-246 847.4
Car06g00521 CST 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 4.2e-242 834.7
Car04g02610 CST 7 332 MAP Kinase Kinase Kinase Kinase AT4G10730 55.3 1.1e-114 411.4
Car16g01156 CST 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 4.8e-117 419.1
Car06g00521 CST 5 364 MAP Kinase Kinase Kinase Kinase AT1G70430 57.5 1.4e-116 417.5
Car04g02610 CST 5 365 MAP Kinase Kinase Kinase Kinase AT1G70430 54.8 3.2e-113 406.4
Car01g00168 . 1 659 MAP Kinase Kinase Kinase Kinase AT1G79640 56.3 1.1e-199 693.7
Car04g02610 CST 6 298 MAP Kinase Kinase Kinase Kinase AT1G79640 61.4 1.2e-121 434.5
Car15g00325 CST 1 337 MAP Kinase Kinase Kinase Kinase AT1G23700 55.3 1.3e-96 350.9
Car01g00168 . 6 301 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 2.0e-81 300.4
Car04g02610 CST 6 249 MAP Kinase Kinase Kinase Kinase AT1G23700 61.9 3.0e-77 286.6
Car06g00521 CST 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 9.0e-74 275.0
Car14g01610 CCT 32 511 MAP Kinase Kinase Kinase Kinase AT4G14480 56.4 3.1e-143 505.8
Car04g02610 CST 5 249 MAP Kinase Kinase Kinase Kinase AT4G14480 50.4 1.4e-66 251.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88577 PF00069 Pkinase 7.60E-41 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00168 Car_Chr01 FPKM 7.020513 7.687028 8.176527 8.420998 14.615942 14.011001 18.125378 10.375908 10.776678 10.800909