Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00173 ATGGCACAGCTACCGCCGAAGATCCCAAATATGGCGACCAATTGGCCGGAATTTTCCCGTCAGAAAATCCCTTCAATTGGAAACTTTGCACCGACAACCACAACGGCGGTGGCGTTTACTCACCAGAACCCTTCTTGGGTCGACGAGTTTCTCGATTTTTCTTCCGCTAGACGTGGGTCTCACCGGCGCTCCGTTAGTGATTCCATCACATTCCTTGAAATGCCAATGCTGGAGGAAGATTGCCGAGGCTCCACTGCGCCGCCACCGCCGCCGGGATCTGGCTCCGGCGACAGGATTGAATTTGATGGATTCGAAGACGAGCAATTCCTATCGATGTTTAACGACGAAATCTCTGCTGGCGTGGCGCCCACCGTGTCGTCGTCGAACCCCTCCACGCCGTCTGATCACAACAGCATTAACGACGAGAAAGATGCCCAAAACGACGGCAAGCAAAATCAGAACAAAAACGAAACCGACGAAGTACAGAGCCAACAGCAATCGGATACTCAAACACAATCCAATTCCACGGCGACGGCGGCTTCCACCGAACGAATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCTGCTCAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTCGAAAGAAGCGTTACATCGCTACAGGCTGAAGTATCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCACTAAAAAGAGAGATAGAGAGACTGAGGCAAGTATATCACCAGCAAAACATGAAGAAGACGGAAAATGCAGCGCCACCCATCACTGCCAGCGTCGCCGTCACGGCGACCACCGCGACGGACGGCAAGCTTTGTAATGTAGGTCAAAAAGAGCAAGCTCCAAACGTGGTCGTTTAG 984 51.12 MAQLPPKIPNMATNWPEFSRQKIPSIGNFAPTTTTAVAFTHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRGSTAPPPPPGSGSGDRIEFDGFEDEQFLSMFNDEISAGVAPTVSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNETDEVQSQQQSDTQTQSNSTATAASTERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNMKKTENAAPPITASVAVTATTATDGKLCNVGQKEQAPNVVV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 946336 948869 - Carg04183-RA Car01g00173 141037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00173 327 Coils Coil 268 288 - -
Car01g00173 327 MobiDBLite consensus disorder prediction 156 183 - -
Car01g00173 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 239 IPR004827 GO:0003700|GO:0006355
Car01g00173 327 Coils Coil 140 160 - -
Car01g00173 327 MobiDBLite consensus disorder prediction 137 155 - -
Car01g00173 327 Pfam bZIP transcription factor 189 233 IPR004827 GO:0003700|GO:0006355
Car01g00173 327 MobiDBLite consensus disorder prediction 80 100 - -
Car01g00173 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Car01g00173 327 MobiDBLite consensus disorder prediction 121 136 - -
Car01g00173 327 MobiDBLite consensus disorder prediction 121 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00173 Car-Chr1:946336 Car01g01054 Car-Chr1:9925086 9.45E-100 dispersed
Car13g00022 Car-Chr13:223187 Car01g00173 Car-Chr1:946336 5.68E-21 dispersed
Car01g00173 Car-Chr1:946336 Car11g01492 Car-Chr11:12037042 2.60E-158 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2779 PF07716 bZIP_2 3.50E-09 CL0018 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00173 - - csv:101205276 483.026