Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00185 ATGGAGTTGGGTTTGAGGCTTGGAGATCAACAACGAACCCACAGCCACAACCCTAAGCTTCTTCACCTCGCTCTTCTTCCTCCTACTCCTACTCCAGACGGCGGCGGTGGGGAATCTCCGAGAAACCCATATCTGTGCTCCTCGTTGGAGCTGGGATTGTATGAAGTGGAAGAGCATCAGGGAAATAGCGACAGAGGTTGCTCTAGAGGCAGCGATGAAGATGATCAAATTTTGGGTTCCAGAAAGAAACTGCGGCTTTCCAGAGAACAGTCGGCGTTCCTTGAAGACAGCTTCAAAGATCATCATACACTTTACCCTAAGCAAAAGGTAGAACTTGCAAGAAGGCTAAATCTCCGTCCACGCCAAGTAGAAGTGTGGTTTCAAAACAGACGAGCAAGAACCAAGCTGAAGCAAACCGAAGTTGACTGTGAGTACTTGAAAAACTGTTGCCAAACACTAACCCAACAAAACAGGAAGCTTCGAAAGGAGCTTCAAGATTTAAGAGCTTTGAAAACCACTGATTCTCTCTTCATGCATTCCCCCGCCACCACTCTCACCATGTGTGCGTCTTGTGAACGCGCCGCCGTTCTTCACCCGCTGAACTCCAAGGCTTCTGGGTTTTCGTTTACTACAAATGGGTCCTCTCCACAATAA 654 48.17 MELGLRLGDQQRTHSHNPKLLHLALLPPTPTPDGGGGESPRNPYLCSSLELGLYEVEEHQGNSDRGCSRGSDEDDQILGSRKKLRLSREQSAFLEDSFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNRKLRKELQDLRALKTTDSLFMHSPATTLTMCASCERAAVLHPLNSKASGFSFTTNGSSPQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1013013 1014636 + Carg07305-RA Car01g00185 141049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00185 217 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Car01g00185 217 Pfam Homeodomain 81 135 IPR001356 GO:0003677
Car01g00185 217 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Car01g00185 217 Coils Coil 150 173 - -
Car01g00185 217 Pfam Homeobox associated leucine zipper 137 171 IPR003106 GO:0006355|GO:0043565
Car01g00185 217 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00185 Car-Chr1:1013013 Car14g00376 Car-Chr14:1884739 9.08E-62 dispersed
Car01g00185 Car-Chr1:1013013 Car17g00882 Car-Chr17:7382958 2.79E-68 wgd
Car01g00185 Car-Chr1:1013013 Car08g00467 Car-Chr8:2988310 1.60E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2780 PF00046 Homeodomain 3.40E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00185 K09338 - egr:104425500 213.001