Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00205 ATGAGTGTCACTGTCGAACCCCCGCGCCTTTCTTCTCTCTCTCAGATCTCCGACTGGTTTTCTTCTGCTGCTATAGATAACTGGGAGGAGAAGCTGGAAACGATTAAGTATCGTAGATATTTGATTATGTGCGGTGGTCCAGAAAAATCCAATTCCGCATCTACTACTACATCAGCAAGCTCACCTAATCCCAAAGACATGAGTCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCATCAGACAACGATGCCGAAGGCTTCAAGCGTTTGATGGAGTCTGATTTGTTATCACCAAACAAGTCTGGGCTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGAACGCCCCTGATGGTTGCTGCAACATATGGTTGTGTTGATGTTCTGAAACTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAAAGCACTGCTCTCCACTGTGCTACCTCCAGTGGATCTGTGAATGCAGTCGATATTGTTGATTTACTTTTGTCTGCTGGTGCTGACCCAAACGCGAAGGATATTAATGGCGATCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAATGTTCAGGCTCGAGGAACTTCTCAATAATCATTCAAATGGGTCCATGGATGTTTCCTGTTTACGTTTGTCAATCAAAATGCCTGATTCAGGGTCACCACCACTTTCCTCATCGTTGGAGGATGAATTTCCATCTCCACCCAAGTCGATGTCTTCTCCCAAATTTACTGATGGGTTAGCAACTACAAAGGAAAAGAAAGAATATCCAATTGATCCATCACTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAGGTGAGGCCTTGTTCTCGGGCGTATTCCCATGATTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAAGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGAACTCGTCTTTGCAAGGATGGCACGAGTTGCAATAGGCGGGTCTGTTTCTTTGCTCACACAAATGAAGAACTAAGGCCATTATATGTGTCTACTGGATCTGCTGTTCCTTCCCCACGATCCATTGGGTCTGCTCCAACTGTAATGGATATGGCTACTGCATTGGGTCTTCTGCCTGGATCCCCATCATCAGTATCAGCTTTATCTCCATCTCCATTTGCTCAGTCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAACCAAATGTACCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGTCGGTTAAGATCATCTCTGAACGCCAGGGATATGCCTCTAGAGGATTTTAATGTCTTGCCAAACTTTGACAACCAGCCACGAATTTTGAATGATATTAACTGTTTCTCTCAGCCTCGTCCGAGTGCCATTTCTGTGAGCCGATCTGGCTGGACCCAAACTCTAACTCCTAACAATCTCGAAGAGCTATTTTCTAATGAAATCCCTTTGTCTCCCCGATTCTCTGATCCAGCCACCAATGTCTTTTCCCCTACTCGCAAATCGACATTACTAAACCAATTTCAGCAGCAGCAGCAGAACATGTTATCACCTATAAATACAAGCATTATGTCTCCTAAGACTGTTGATCAGCCTTTGTTGCAGGCCTCTTTTGGAGTGTCATCGCCTGGAAGGATGTCGCCTAGAAGCACAGAGCCACTGTCTCCAATGGGATCTAGGTTTTCCGCTTTTGTACAGCGTGAAAAGCAACATCTCCGCAGTCTCAGCTCAAGGGAGCTTGGATCCAATGTCCCAAGCTCGTTGATTGGATCTCCTGTCAATTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTGGATTGGTCAGTTGGTAAGAATGAACTGGGTCAACTGCGTAGATCATCTTCTTTCGAGATCGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCGCCTGAGATGCTAAGAGAGAAGTCGGCAGCGCCCAGGATGGGTGGTGCTGCAGCATCCGGTGAGGGTCTAACTTCTACTAAATCACAATTAGAATCCACTGATCATTCTGTGATAGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2304 45.57 MSVTVEPPRLSSLSQISDWFSSAAIDNWEEKLETIKYRRYLIMCGGPEKSNSASTTTSASSPNPKDMSHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLLSPNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSSGSVNAVDIVDLLLSAGADPNAKDINGDRPVDVIFVHPKLQKQNTMFRLEELLNNHSNGSMDVSCLRLSIKMPDSGSPPLSSSLEDEFPSPPKSMSSPKFTDGLATTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFAQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDFNVLPNFDNQPRILNDINCFSQPRPSAISVSRSGWTQTLTPNNLEELFSNEIPLSPRFSDPATNVFSPTRKSTLLNQFQQQQQNMLSPINTSIMSPKTVDQPLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQHLRSLSSRELGSNVPSSLIGSPVNSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLREKSAAPRMGGAAASGEGLTSTKSQLESTDHSVIGAWLEQMQLDQLVV 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1119721 1124558 - Carg07325-RA Car01g00205 141069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00205 767 ProSiteProfiles Zinc finger C3H1-type profile. 344 366 IPR000571 GO:0046872
Car01g00205 767 MobiDBLite consensus disorder prediction 243 270 - -
Car01g00205 767 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 364 IPR000571 GO:0046872
Car01g00205 767 Pfam Ankyrin repeats (3 copies) 113 192 IPR002110 GO:0005515
Car01g00205 767 ProSiteProfiles Ankyrin repeat profile. 158 193 IPR002110 GO:0005515
Car01g00205 767 MobiDBLite consensus disorder prediction 715 745 - -
Car01g00205 767 ProSiteProfiles Ankyrin repeat region circular profile. 158 192 - -
Car01g00205 767 MobiDBLite consensus disorder prediction 444 464 - -
Car01g00205 767 MobiDBLite consensus disorder prediction 242 270 - -
Car01g00205 767 MobiDBLite consensus disorder prediction 48 67 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00205 Car14g00909 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00205 Car-Chr1:1119721 Car14g00415 Car-Chr14:2109824 0 dispersed
Car01g00205 Car-Chr1:1119721 Car14g00909 Car-Chr14:5436453 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2781 PF12796 Ank_2 9.00E-11 CL0465 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00205 - - csv:101205376 1286.55