Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00216 ATGGGTCGAGGGAAGATTGAGATCAAACGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCAAAGCGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGCTCTGGCATGAAACATACTCTTTCAAGATACAACAGATGTATAGAATCTTCAGAGACTCCGATAGACGGACACAAGGCTGAGTATCTTCATCTCCAGAAGCAAGAGCATGAGGAGGTAGACAATCTACGAGATGAAATAACGACTCTGCAAATGAAACAATTGCAGCTACTGGGAAAGGATCTAACTGGCTTGGGCTTCAAGGAATTGCAAAACCTAGAGCAACAACTAAATGAAGGGCTCTTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAACAACTAGAGCAATCAAGGGTACAGGTCAGCGAGCTTCGATGTCTGTTTCCTCCAGTTGACTGTCCGCTTCCTGCTTATCTTGAATACTGCACCCTAGAGAAGAAGAAGGTAGGCATTAGAATCCCCGATGTCGCCTGCAACTCCGAAATAGAAAGAGGAGATTCCGACACCACCTTGCACTTGGGGCTACCATCACATGTCTATTGCAAGAGAAAGGAGGCTGAAAGAGATACTCATTCAAATGATTCAGGGAGTCAAATGGGCCTACTCTGA 729 44.31 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCIESSETPIDGHKAEYLHLQKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQVSELRCLFPPVDCPLPAYLEYCTLEKKKVGIRIPDVACNSEIERGDSDTTLHLGLPSHVYCKRKEAERDTHSNDSGSQMGLL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1170227 1173093 - Carg07336-RA Car01g00216 141080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00216 242 Coils Coil 91 111 - -
Car01g00216 242 ProSiteProfiles K-box domain profile. 91 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00216 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car01g00216 242 Coils Coil 128 148 - -
Car01g00216 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car01g00216 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car01g00216 242 Pfam K-box region 91 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00216 Car-Chr1:1170227 Car03g00044 Car-Chr3:525038 3.17E-50 dispersed
Car01g00216 Car-Chr1:1170227 Car16g00251 Car-Chr16:1590857 1.11E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2782 PF01486 K-box 1.20E-14 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00216 - - cmax:111493101 432.95