Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00236 ATGGAGACTGGTTATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTATGGATTTGAGGGCTGCTGTTAGGAAGAAGAGCCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTTTTTATTGCTAGGCCTTTAAATTTGGTGGAGTCTGATCATTTAGGTAGCCAAGTTTTTCCAATTGTCTCTGGGATTCCCTTGACCGGTGGCTCGTCGAACAGTTCGTCGTCGTGTTCTGATGAAGCTAATACGGGGATCGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGATAATGTTATGGAAGATGAGAATCTTAATGATGAAGCTCGTAGTTTGAGTTTGAAGGTTGGTGGAAATGGTTGTCAAATTGTTGAGAAAGAAGCAGGGAATTGGGAAGGAAGTAGTGGCAAGAAGACTAAACTAACCGGGGGAAACTCGAGTCGTGCGGTTTGCCAGGTAGAGGACTGTGGAGCTGATCTTAGCAATGCTAAAGATTATCACAGAAGACATAAAGTCTGCGAAATGCATTCGAAGGCGAGTAATGCGCTCGTTGCTAACGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAGGAGTTCGATGAAGGTAAACGGAGTTGTCGAAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAGAACAATCCTGATAATGTTGTCAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTCTAATGCGAATACTCGCAAATTTGCACTCCAATGGATCAAACAAGACCACAGACCAAGATCTTCTTTCGAATCTTATACGGATCCTTGCCTGTAAATCCGGTGAGCACGGCGGTAAAAACCGATCTGGGATTCTGCATGAACCTCAGAATTTGCTGAACGGGGCTAAATCCGATCTAGTTTGTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGATCTTCTAAACAACCTGACACGATACCGATATCCGAGACACCAGTACAAGCAACTGTTCGGGGTGGAGATACACCAGCTATATCTTCTGTAAAACCAAGCACTTCAAACAGCCCTCCCGCGTATTCAGAAATCAGGGACAATACGGTTGGACAGTGCAAAATGATGAACTTTGATTTGAACGATGTTTATGTCGACTCGGACGATGGCATGGAAGACATTGAGAGACAAGCACGCCCAGTAGTGCATATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCGCATCAGTCAAGCCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCATTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGTACAGATCGGATCATTTTGAAACTGTTCGGGAAAGCACCAAATGATTTTCCTCACGTTTTACGAGCTCAGGTTCTCAATTGGTTATCACATAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGACAGACTGAGGCTGCATGGAACGATCTTTGCCATGACCTCGGTACCAGTTTGAATAGGCTTCTTGATGTTTCCGACGAAGCTTTCTGGAGAACTGGATGGGTTTACGTTCGGGTTCAGCATCAAATAGCTTTCGTTTATCATGGTCAGGTCGTAGTCGACACATCCTTGCCTCTTAGAAACAAGAATTACTGTCGTATCACAAGCGTAAACCCCGTTGCCGTTCCTTTATCGAAGAAGGCTATATTTTCGGTTAAAGGAATAAACTTAACCCGATCGACAACTAGGTTACTGTGTGCCATTGAAGGGACATATCTTACTCAGGAAGCTTCAGGTGATTCAACAGAAAGTGATGATAACTCGAATGCACGAGACGACAGCCAATGCGTAACCTTTTCTTGCTCGATTCCTGTCGTCTATGGAAGGGGATTCATCGAGGCTGAAGATGATGGTTTGAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAAGAGGATGTTTGTACAGAGATCTGCACACTTCAAAGTGCTTTGGAATTTACTGAAATATGTTCAAATTCTGGGGAAGCTACGGAGCTGGAAGGAAGGAGTCATGCAATGGAGTTCATCCATGAAATTGGTTGGCTGTTTCATAGAAATCACTTGAAGTCTAGATTAGGTAACTTGGATCCTAACGAAAATGTCTTTTCGCTGTCACGGTTCAAGTGGCTGGTCGAGTTCTCTATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTCTTAGATGTCCTTCTTGATGGGACTGTGGACTTTGGAGATCACCCGTCGTTGAATTTTGCGTTGACCGAAATGAGTCTACTTCACCGAGCAGTGAGAAAAAACAGTCGGTCGTTGGTCGAGCTCCTTTTGGGTTACTCTTCAAAAGTGATGGACTCATCAAGTTCTGATGGATCGACCGGTAGCTTCCTGTTTAGACCTGATGTCGTTGGCCCGGCCGGGTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCATGGATGTTCTTGATGCGTTAACGAATGATCCGGGAATGGTAGGAGTTGAGGCTTGGAAGAGTGCTCGAGACGTCACAGGCTCGACACCTGAGGATTACGCTCGTTTGCGTGGCCATTACTCGTATATTCGTCTCGTCCAGAGGAAAATCAACAAGAGATCTTCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTGTCTCAGATGGTAGCTGGAACCAGAAGCAGAACACTGATATGATGACCTCCTCCAGGTTTGAGATTGGTAGGACAAAACTAAAGCATTCTCAGCAGGATTGCAGCCGTTGTGTTATGAAACCGAGCGGTTTCGGAACGTCGTCTAAAGCGTCTCTGGTCTACCGGCCTGCAATGCTTTCAATGGTGGCCATTGCTGCTGTGTGTGTGTGTGTGGCGCTCTTATTCAAAAGCTCGCCCGAGGTTTTCTATGTCTTCCGCCCGTTCCGATGGGAACTACTAGAATACGGTACTAGTTAG 3018 45.56 METGYGGEACQLYGMGSMDLRAAVRKKSLEWDLNDWKWDGDLFIARPLNLVESDHLGSQVFPIVSGIPLTGGSSNSSSSCSDEANTGIEKGKREVEKRRRDNVMEDENLNDEARSLSLKVGGNGCQIVEKEAGNWEGSSGKKTKLTGGNSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKNNPDNVVNGNSPPDEQTSSYLLLTLMRILANLHSNGSNKTTDQDLLSNLIRILACKSGEHGGKNRSGILHEPQNLLNGAKSDLVCTFLSNGPQVPLRSSKQPDTIPISETPVQATVRGGDTPAISSVKPSTSNSPPAYSEIRDNTVGQCKMMNFDLNDVYVDSDDGMEDIERQARPVVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAHSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLNWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWNDLCHDLGTSLNRLLDVSDEAFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAVPLSKKAIFSVKGINLTRSTTRLLCAIEGTYLTQEASGDSTESDDNSNARDDSQCVTFSCSIPVVYGRGFIEAEDDGLSSSSFPFIVAEEDVCTEICTLQSALEFTEICSNSGEATELEGRSHAMEFIHEIGWLFHRNHLKSRLGNLDPNENVFSLSRFKWLVEFSMDHDWCAVVKKLLDVLLDGTVDFGDHPSLNFALTEMSLLHRAVRKNSRSLVELLLGYSSKVMDSSSSDGSTGSFLFRPDVVGPAGLTPLHIAAGKDDSMDVLDALTNDPGMVGVEAWKSARDVTGSTPEDYARLRGHYSYIRLVQRKINKRSSAGHVVLDIPSTVSDGSWNQKQNTDMMTSSRFEIGRTKLKHSQQDCSRCVMKPSGFGTSSKASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVFYVFRPFRWELLEYGTS 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1308868 1314217 + Carg07356-RA Car01g00236 141100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00236 1005 MobiDBLite consensus disorder prediction 342 367 - -
Car01g00236 1005 MobiDBLite consensus disorder prediction 71 85 - -
Car01g00236 1005 MobiDBLite consensus disorder prediction 219 243 - -
Car01g00236 1005 Pfam SBP domain 155 228 IPR004333 GO:0003677
Car01g00236 1005 MobiDBLite consensus disorder prediction 71 99 - -
Car01g00236 1005 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Car01g00236 1005 MobiDBLite consensus disorder prediction 416 451 - -
Car01g00236 1005 MobiDBLite consensus disorder prediction 352 367 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00236 Car14g00872 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00236 Car-Chr1:1308868 Car09g00010 Car-Chr9:62352 2.80E-37 dispersed
Car01g00236 Car-Chr1:1308868 Car14g00872 Car-Chr14:5138923 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2783 PF03110 SBP 9.20E-30 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00236 - - csv:101203103 1702.18