Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00315 ATGGCCTCAACAACTGCAGATAATATGATATCTTCCATAGATATAGATATTGAATCCATATCACCTTCAACTAAACTTGTTGAGTGCAGAATTTGTCATGATGAGGATGATGAATCAAATATGGAAACACCCTGCTCTTGCCGTGGCAGCTTGAAGTATGCTCATCGTTTGTGCGTTCAGCGGTGGTGCAACGAGAAAGGCAACACAATCTGCGAGATTTGCCACCAGGACTTTAAGCCAGGGTACACAGCACCTCCCCATGTGTTTTATAATGGAGGTATTAGCTCACTAATGCATTTCAGGGGAAGTTGGGAGATGTCAAGGCCGAACCAGCATGTCCCTGCAGGAATGCTCGATCACGAGTATCTCGATTCCGCGTTCGATGATTTCATCAGTCCCTCTCCATGCAGCGTACTGTGCTGCCGCATAGTTGCAGTAATGTTCATCGTTCTCCTTGTTTTACGCCATACTCTACCGATTATAATTAGTGGAGCTGGAGAGTATTCACTGACATTGTTAATGTTGCTGATCTTGAGAATTGTTGGGATTCTTCTGCCTATATATGTCATGGTTAGGGTATTTACTTCCATTCGAAGACGGCGTCATTATCAGGTT 615 44.07 MASTTADNMISSIDIDIESISPSTKLVECRICHDEDDESNMETPCSCRGSLKYAHRLCVQRWCNEKGNTICEICHQDFKPGYTAPPHVFYNGGISSLMHFRGSWEMSRPNQHVPAGMLDHEYLDSAFDDFISPSPCSVLCCRIVAVMFIVLLVLRHTLPIIISGAGEYSLTLLMLLILRIVGILLPIYVMVRVFTSIRRRRHYQV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1786191 1789993 - Carg07435-RA Car01g00315 141179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00315 205 Pfam Protein of unknown function (DUF3675) 80 193 IPR022143 -
Car01g00315 205 Pfam RING-variant domain 29 74 IPR011016 GO:0008270
Car01g00315 205 ProSiteProfiles Zinc finger RING-CH-type profile. 21 81 IPR011016 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00315 Car17g01068 CCT
Car01g00315 Car17g01068 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00315 Car-Chr1:1786191 Car04g02042 Car-Chr4:16613411 1.71E-61 dispersed
Car15g00897 Car-Chr15:5456797 Car01g00315 Car-Chr1:1786191 1.83E-28 dispersed
Car01g00315 Car-Chr1:1786191 Car14g00785 Car-Chr14:4552655 4.45E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00315 - - csv:101208390 318.931