Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00326 ATGGCGACGAAGACCGATGGAATCCAAGAGGAAGAAATTTCAAAGCTCGAGGAAGGCACTCTCGGAACCTGCGTCGCGCGTCTCCGTCCATCGTCTTGGGTTGCTATCATCCAAAAGGTTATTGCGGAGGTGATTGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGTGGTGAACAAAATTTACGGATCAGTGACGTTCCCGGGAATCTGCGTGGTTTGGGGATTGATTGTGATGGTTATGGTGTATTCGTTGGGACACGTCTCTGGAGCGCACTTCAACCCTTCTGTTACCATCACATTCGCCATTTTTCGTCGCTTCCCCTTTTGTCAGGTTCCAATATACATAGGAGCTCAAGTAGCAGGGTCCCTTCTTGCCAGCACCACGCTGGACCTATTGTTTGAAGTGACCCCGGAAGCCTTCTTTGGGACAGTGCCTGCAGGATCCGATGTCCAATCTTTCGTCCTTGAAATCATCATCACCTTCCTCTTGCTGTTAGTCGTCTCTGGTGTCTCCACCGATCACAGAGCTGTAGGAGAATTGGCGGGAATTGTCGTTGGAATGACTGTTCTGTTGAATGTCTTCGTGGCTGGGCCGATTTCAGGAGCTTCCATGAATCCAGCTAGGACCATTGGACCTGCGATAGTGAAGGGACAGTTCAAAGGCTTATGGGTTTACATGGTTGGGCCGTTGATCGGAGCTATTGCCGGAGCATTTACTTACAACCTGATGAGATTCACAGACAAGCCATTGTCTGAGATCACCAAAAGCAGCTCATTCCTCAATCGCTCCCAAAAATCATAA 810 49.63 MATKTDGIQEEEISKLEEGTLGTCVARLRPSSWVAIIQKVIAEVIGTYFVIFTGCGAVVVNKIYGSVTFPGICVVWGLIVMVMVYSLGHVSGAHFNPSVTITFAIFRRFPFCQVPIYIGAQVAGSLLASTTLDLLFEVTPEAFFGTVPAGSDVQSFVLEIIITFLLLLVVSGVSTDHRAVGELAGIVVGMTVLLNVFVAGPISGASMNPARTIGPAIVKGQFKGLWVYMVGPLIGAIAGAFTYNLMRFTDKPLSEITKSSSFLNRSQKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1859616 1862588 - Carg07446-RA Car01g00326 141190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00326 269 Pfam Major intrinsic protein 34 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car01g00326 269 SUPERFAMILY Aquaporin-like 34 256 IPR023271 -
Car01g00326 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Car01g00326 269 Gene3D Glycerol uptake facilitator protein. 4 258 IPR023271 -
Car01g00326 269 PANTHER AQUAPORIN NIP4-1-RELATED 28 258 - -
Car01g00326 269 PANTHER AQUAPORIN NIP2-1 28 258 IPR034294 -
Car01g00326 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00326 Car-Chr1:1859616 Car03g01208 Car-Chr3:9461180 5.60E-107 dispersed
Car14g01513 Car-Chr14:12479080 Car01g00326 Car-Chr1:1859616 7.37E-42 dispersed
Car01g00326 Car-Chr1:1859616 Car07g00137 Car-Chr7:829521 1.47E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00326 K09874 - csv:101215315 436.032