Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00337 ATGTTCTTGTCATGGAGGAGAAGCAAACTTGGGTTTCTACCCAAGTTGAAGAAAGAGCATCTTCCGGGCGTTGATTCGGGTTCTGAAATTGTGATTCCTTCGCATTTTCTATGTCCGATTTCGCTTGATTTGATGAAGGATCCTGTAATTTTGTCCACCGGGATTACTTATGATAGAGAGAGCATCGAGAAGTGGATTGAGGGTGGGAAGTTTTCTTGTCCTGTGACGAAACAGGATTTGATGAGTTTTGACCTAATCCCTAATCATACCTTGAGGAGGATGATCCAAGATTGGTGCGTTGCGAATCATTCTTACGGAATTGAGCGGATTCCAACACCGCGGATTCCAGTCACGCCGTATGAAGTTAATGACGTTTGTTCGAGAATCGCCGTCGCGACTCAAAGGGGCGATTCGAAGAGATGCAGTGAATTGGTGGGTAAGATCAGGAATTGGGCGAGAGAGAGCGAGAGGAATCGGAGGTGCGTTGTGAATGGAGGAACTGGGATTGTTCTAGCAGCTTCGTTTGAGCATTTTTCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGTATGTGTATTCCCAATCTCCATTGAAGGGTTATCCAAGCTCGGATCTGCGGATTCCTTGAAATGCTTGGTTTCCTTCTTAATGGAGAAAAATCTTTCACCAAAACAGAACGCAGTTTTTGTTCTGAAAGAACTGCTTCTGGTTGATCAAAGATACGTCGATTCATTGGCTGCCATTGAAGGAGTATCCGAAGCTTTAGTTAGCATCATAAGGGAGCCTCTTTGCCCTTCAGCTACAAAATCATCCCTTACAGCCATTTTCTACATGATTTTACCATCAGAAATCAGCGAGAAAATGACATTGAAATTCATGGAACTGGGCTTGGTCTCTCAGCTGCTAGATTTCCTTGTAGATGCAGAGAAAAGCCTGTGTGAGAAAGCGTTGGGAGTATTGGATGGAATCTGTGATTTTAAACAAGGAAGAGAGAAGCTATACCAAAATGCACTAACAATTCCATTGTTAGTCAAGAAGATCCTAAGAGTATCAGAGGTTGCCTCTGAGTATTGTCTGTCAATACTATTGAAGCTTTGTAAGAGTGGAGAGAAGGGTGAGGATGAGGCGAGGGTGGAAGCTGCTCAACTGGGTGCTTTCCAGAAGATAATTGTTCTTTTGCAGGTTGGTTGCGGTGGTGACATGAAAAACAAGGTCACTGAGATGTTGAAATTGTTGAATCTTTACAAGGATAGGTTAGATTGTATTGATTCATCCATGCATTTTAAGTTCTTGAAGAAATCATTCTGA 1332 42.72 MFLSWRRSKLGFLPKLKKEHLPGVDSGSEIVIPSHFLCPISLDLMKDPVILSTGITYDRESIEKWIEGGKFSCPVTKQDLMSFDLIPNHTLRRMIQDWCVANHSYGIERIPTPRIPVTPYEVNDVCSRIAVATQRGDSKRCSELVGKIRNWARESERNRRCVVNGGTGIVLAASFEHFSGVSIEKHVGLLEEILLVLVCVFPISIEGLSKLGSADSLKCLVSFLMEKNLSPKQNAVFVLKELLLVDQRYVDSLAAIEGVSEALVSIIREPLCPSATKSSLTAIFYMILPSEISEKMTLKFMELGLVSQLLDFLVDAEKSLCEKALGVLDGICDFKQGREKLYQNALTIPLLVKKILRVSEVASEYCLSILLKLCKSGEKGEDEARVEAAQLGAFQKIIVLLQVGCGGDMKNKVTEMLKLLNLYKDRLDCIDSSMHFKFLKKSF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1927300 1928631 + Carg07457-RA Car01g00337 141201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00337 443 Pfam U-box domain 32 102 IPR003613 GO:0004842|GO:0016567
Car01g00337 443 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00337 Car-Chr1:1927300 Car04g00082 Car-Chr4:435930 1.67E-145 dispersed
Car01g00337 Car-Chr1:1927300 Car04g00968 Car-Chr4:5584879 4.94E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00337 - - csv:101220059 774.237