Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00353 ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGTAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGAGTCCTGAATCTCAGGCTAACGCTACTGTTTTTCTTGCTAAGTTTTATGGCCGTGCTGGACTCATGAATCTTATCAACGCTGGTCCTGAGCATCTACGGCCTGCGATCTTTAGATCTCTTCTCTATGAGGCTTGTGGACGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTAGTAATTGGTATCTCTGTCAGGCGGCTGTTGAGGCGGTGCTTAAAGGTGCTCCGATTATTCCGATTAATTCTGAGGCGGCCGCGACTGGCGATGGACCGCCGTTGAAGGCTTACGACATTCGTCATATTTCGAAGGATGAAAACTCCGCCGCCTCCAACGATGGTGGAGCGAATCGGCGAGTCAGGACTCGGTGCCGTTTTAAGCGATCGGCCGTGAAGGATAAAGAGAGTACTGGAATCGTATCTGCTGTAGCGGAGTCGACTCGGCGACTGTTCTCCTCGACAGAGATTAACCGTTCGTCGAGCGGCGAGTCGTCGCTGAGTCACCAATCTGACTCGCCGCATCTCGAACATGAGAGCAAAGAAACCGAGAGCATGATCTCGGTGGAGACGGCGGATGTTTCTCCTCCTTCGACGCCGTCAGCTTTCTTCAGATCGGAATCCAGTCACGTACAAAGGAAATTCACCAACCACGACGGCAGCAGGATGACAATTCCGGAAAGCGAATTAGCTCTAGAACTTACCCTGGGGATGGAGCCGGTATCACGTGCCCAGCACGTGGTTCCAATGAAGAAGCGAAAGATAGAGGGCAACGATGGGCTGAGGCCCAATAAGGAAACGTGCAATACGGTTTTGGGCCTTGATTTTGCAGCCGGAAACTAG 933 51.02 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWYLCQAAVEAVLKGAPIIPINSEAAATGDGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIVSAVAESTRRLFSSTEINRSSSGESSLSHQSDSPHLEHESKETESMISVETADVSPPSTPSAFFRSESSHVQRKFTNHDGSRMTIPESELALELTLGMEPVSRAQHVVPMKKRKIEGNDGLRPNKETCNTVLGLDFAAGN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2001161 2002321 + Carg07473-RA Car01g00353 141217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00353 310 MobiDBLite consensus disorder prediction 201 216 - -
Car01g00353 310 MobiDBLite consensus disorder prediction 217 240 - -
Car01g00353 310 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Car01g00353 310 MobiDBLite consensus disorder prediction 184 240 - -
Car01g00353 310 MobiDBLite consensus disorder prediction 184 200 - -
Car01g00353 310 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00353 Car-Chr1:2001161 Car10g00222 Car-Chr10:1062938 2.12E-80 dispersed
Car01g00353 Car-Chr1:2001161 Car14g00743 Car-Chr14:4170324 1.78E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2792 PF03195 LOB 4.50E-24 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00353 - - cmax:111492566 580.096