Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00388 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATAAACAGGCAGGTAACATTTGCCAAGAGAAGGAGTGGGCTGTTGAAGAAAGCTTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAGCTCTATGAGTTCTGTAGCACTTCCAACATGCTTAAGACACTGGAAAGGTACCAGAAATGCAGTTATGGAGCTGTCGAGGTCGCCAAACCCGCCAAAGAGCTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGAGCTGGGTCCATTGAACTCTAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACCCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGATCTCTAACATTAAAGCTAGAAGAAATGAGTTCAAGAAACAACATAAGACTAACATGGGAAGAAGTAGACCAAAGCATGTCATATGCACCACAGAATGCCCAAACTCAAGGCTTCTTTCAGCCACTGGATTGCAACCCCACTCTGCAAATTGGATACAGTGGTTCAGTATCAGATCAAATTACAGCCACCACTGCCCCAAATCATGCCCAACAAGTCAATGCCTTTCTCCCTGGTTGGATGCTTTGA 741 44.26 MGRGRVELKRIENKINRQVTFAKRRSGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVAKPAKELESSYREYLKLKARFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRSLTLKLEEMSSRNNIRLTWEEVDQSMSYAPQNAQTQGFFQPLDCNPTLQIGYSGSVSDQITATTAPNHAQQVNAFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2203234 2206497 + Carg20377-RA Car01g00388 141252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00388 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Car01g00388 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car01g00388 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Car01g00388 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Car01g00388 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car01g00388 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00388 246 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00388 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car01g00388 246 Coils Coil 121 144 - -
Car01g00388 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Car01g00388 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Car01g00388 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car01g00388 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car01g00388 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car01g00388 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00388 Car-Chr1:2203234 Car18g00017 Car-Chr18:76206 7.19E-86 dispersed
Car08g00156 Car-Chr8:948617 Car01g00388 Car-Chr1:2203234 3.97E-19 dispersed
Car16g00140 Car-Chr16:792559 Car01g00388 Car-Chr1:2203234 2.98E-33 dispersed
Car01g00388 Car-Chr1:2203234 Car01g00389 Car-Chr1:2218796 1.36E-12 tandem
Car17g01325 Car-Chr17:9913236 Car01g00388 Car-Chr1:2203234 3.86E-26 transposed
Car01g00388 Car-Chr1:2203234 Car14g01026 Car-Chr14:8791655 3.04E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2795 PF01486 K-box 2.70E-26 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00388 K09264 - csv:101208204 442.965