Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00402 ATGTCGACTGTTGATTCTTCACGGGAGGAAAATGTTTACTTGGCCAAGTTGGCCGAACAGGCCGAACGGTATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAAACTGTGGATGTGGAGGAGCTGACTGTTGAGGAGAGGAATCTTCTCTCTGTTGCTTACAAGAATGTCATTGGGGCTAGGAGGGCCTCTTGGAGGATAATATCTTCCATTGAGCAGAAGGAAGAAAGTCGTGGAAATGAGGACCATGTTGCAGTTATCAAGGAGTACCGTAGCAAAATCGAAACTGAATTGAGCAAGATCTGTGATGGGATTTTGAGCCTACTCGAGTCTCATCTCATCCCATCAGCCTCATCTGCCGAGTCGAAGGTGTTTTATCTCAAAATGAAAGGTGACTACCACAGGTATCTGGCCGAATTCAAGACTGGAGCTGAAAGGAAAGAAGCAGCTGAGAGCACATTATTAGCTTACAAGTCTGCTCAGGATATTGCTCTTGCTGAATTGGCTCCTACACATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTCAATTCGCCAGACCGCGCTTGCAATTTAGCAAAGCAGGCTTTTGACGAAGCGATTTCTGAGCTTGACACATTGGGTGAGGAATCATACAAGGATAGCACCTTAATCATGCAACTTCTCCGAGACAACTTGACCCTTTGGACCTCTGATGTTGGGGATGAAGCCGGCGATGAAATTAAGGAAGCATCAAAACGTGAATCAGGAGAGGGACATGGACAGTAG 792 45.58 MSTVDSSREENVYLAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAVIKEYRSKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDVGDEAGDEIKEASKRESGEGHGQ 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2301824 2303625 + Carg20391-RA Car01g00402 141266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Car01g00402 263 PANTHER 14-3-3-LIKE PROTEIN GF14-F 5 257 - -
Car01g00402 263 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Car01g00402 263 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Car01g00402 263 Coils Coil 14 34 - -
Car01g00402 263 Pfam 14-3-3 protein 14 238 IPR023410 -
Car01g00402 263 PANTHER 14-3-3 PROTEIN 5 257 IPR000308 -
Car01g00402 263 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Car01g00402 263 SMART 1433_4 8 251 IPR023410 -
Car01g00402 263 PIRSF 14-3-3 2 250 IPR000308 -
Car01g00402 263 Gene3D - 1 251 IPR036815 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00402 Car-Chr1:2301824 Car09g00495 Car-Chr9:2767971 1.07E-160 dispersed
Car01g00402 Car-Chr1:2301824 Car12g00154 Car-Chr12:881107 6.33E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00402 K06630 - csv:101222068 500.36