Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00402 ATGTCGACTGTTGATTCTTCACGGGAGGAAAATGTTTACTTGGCCAAGTTGGCCGAACAGGCCGAACGGTATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAAACTGTGGATGTGGAGGAGCTGACTGTTGAGGAGAGGAATCTTCTCTCTGTTGCTTACAAGAATGTCATTGGGGCTAGGAGGGCCTCTTGGAGGATAATATCTTCCATTGAGCAGAAGGAAGAAAGTCGTGGAAATGAGGACCATGTTGCAGTTATCAAGGAGTACCGTAGCAAAATCGAAACTGAATTGAGCAAGATCTGTGATGGGATTTTGAGCCTACTCGAGTCTCATCTCATCCCATCAGCCTCATCTGCCGAGTCGAAGGTGTTTTATCTCAAAATGAAAGGTGACTACCACAGGTATCTGGCCGAATTCAAGACTGGAGCTGAAAGGAAAGAAGCAGCTGAGAGCACATTATTAGCTTACAAGTCTGCTCAGGATATTGCTCTTGCTGAATTGGCTCCTACACATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTCAATTCGCCAGACCGCGCTTGCAATTTAGCAAAGCAGGCTTTTGACGAAGCGATTTCTGAGCTTGACACATTGGGTGAGGAATCATACAAGGATAGCACCTTAATCATGCAACTTCTCCGAGACAACTTGACCCTTTGGACCTCTGATGTTGGGGATGAAGCCGGCGATGAAATTAAGGAAGCATCAAAACGTGAATCAGGAGAGGGACATGGACAGTAG 792 45.58 MSTVDSSREENVYLAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAVIKEYRSKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDVGDEAGDEIKEASKRESGEGHGQ 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2301824 2303625 + Carg20391-RA Car01g00402 141266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Car01g00402 263 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Car01g00402 263 PANTHER 14-3-3-LIKE PROTEIN GF14-F 5 257 - -
Car01g00402 263 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Car01g00402 263 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Car01g00402 263 Coils Coil 14 34 - -
Car01g00402 263 Pfam 14-3-3 protein 14 238 IPR023410 -
Car01g00402 263 PANTHER 14-3-3 PROTEIN 5 257 IPR000308 -
Car01g00402 263 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Car01g00402 263 SMART 1433_4 8 251 IPR023410 -
Car01g00402 263 PIRSF 14-3-3 2 250 IPR000308 -
Car01g00402 263 Gene3D - 1 251 IPR036815 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00402 K06630 YWHAE; 14-3-3 protein epsilon - csv:101222068 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00402 Car-Chr1:2301824 Car09g00495 Car-Chr9:2767971 1.07E-160 dispersed
Car01g00402 Car-Chr1:2301824 Car12g00154 Car-Chr12:881107 6.33E-163 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car09g00495 CCT,CST 4 242 14-3-3 family AT4G09000 90.4 4.6e-119 424.9
Car05g00457 CCT,CST 3 242 14-3-3 family AT4G09000 89.7 3.9e-118 421.8
Car01g01232 CCT,CST 4 242 14-3-3 family AT4G09000 89.5 8.7e-118 420.6
Car12g00154 CCT,CST 4 242 14-3-3 family AT4G09000 90.0 1.1e-117 420.2
Car01g00402 . 6 241 14-3-3 family AT4G09000 86.4 4.2e-112 401.7
Car05g00505 . 10 247 14-3-3 family AT4G09000 74.8 1.2e-98 357.1
Car12g00168 . 10 246 14-3-3 family AT4G09000 73.0 4.2e-96 348.6
Car19g00808 . 4 238 14-3-3 family AT4G09000 73.0 3.9e-94 342.0
Car11g01576 . 4 238 14-3-3 family AT4G09000 72.2 1.3e-92 337.0
Car05g00448 CCT,ECH 5 236 14-3-3 family AT4G09000 70.1 5.9e-90 328.2
Car12g00098 . 46 277 14-3-3 family AT4G09000 71.8 2.9e-89 325.9
Car01g01226 CCT,ECH 5 236 14-3-3 family AT4G09000 68.4 1.8e-83 306.6
Car04g01734 . 4 204 14-3-3 family AT4G09000 60.9 4.0e-70 262.3
Car05g00394 . 1 111 14-3-3 family AT4G09000 80.2 3.1e-46 183.0
Car05g00457 CCT,CST 6 261 14-3-3 family AT1G78300 89.5 6.6e-124 440.7
Car09g00495 CCT,CST 5 258 14-3-3 family AT1G78300 89.8 1.1e-123 439.9
Car12g00154 CCT,CST 8 261 14-3-3 family AT1G78300 89.8 3.3e-123 438.3
Car01g01232 CCT,CST 5 258 14-3-3 family AT1G78300 89.4 4.3e-123 438.0
Car01g00402 . 6 253 14-3-3 family AT1G78300 87.5 1.6e-117 419.5
Car05g00505 . 11 246 14-3-3 family AT1G78300 76.3 2.5e-99 359.0
Car12g00168 . 11 247 14-3-3 family AT1G78300 74.3 5.3e-97 351.3
Car19g00808 . 7 247 14-3-3 family AT1G78300 71.6 1.1e-94 343.6
Car11g01576 . 7 247 14-3-3 family AT1G78300 71.6 9.3e-94 340.5
Car05g00448 CCT,ECH 1 250 14-3-3 family AT1G78300 67.5 5.1e-92 334.7
Car12g00098 . 46 295 14-3-3 family AT1G78300 69.4 4.3e-91 331.6
Car01g01226 CCT,ECH 1 248 14-3-3 family AT1G78300 65.6 2.3e-84 309.3
Car04g01734 . 8 209 14-3-3 family AT1G78300 61.5 4.2e-70 261.9
Car05g00394 . 1 114 14-3-3 family AT1G78300 78.9 3.8e-47 185.7
Car01g00402 . 6 259 14-3-3 family AT5G38480 89.0 3.6e-122 434.9
Car09g00495 CCT,CST 6 252 14-3-3 family AT5G38480 85.8 2.5e-115 412.1
Car12g00154 CCT,CST 6 252 14-3-3 family AT5G38480 85.8 2.7e-114 408.7
Car01g01232 CCT,CST 6 252 14-3-3 family AT5G38480 84.6 1.0e-113 406.8
Car05g00457 CCT,CST 6 252 14-3-3 family AT5G38480 84.6 1.2e-112 403.3
Car12g00168 . 10 251 14-3-3 family AT5G38480 74.0 3.0e-97 352.1
Car05g00505 . 10 248 14-3-3 family AT5G38480 74.1 8.8e-97 350.5
Car05g00448 CCT,ECH 5 247 14-3-3 family AT5G38480 71.8 5.9e-93 337.8
Car19g00808 . 7 247 14-3-3 family AT5G38480 72.4 5.9e-93 337.8
Car11g01576 . 7 249 14-3-3 family AT5G38480 71.4 1.7e-92 336.3
Car12g00098 . 46 293 14-3-3 family AT5G38480 72.0 1.1e-91 333.6
Car01g01226 CCT,ECH 5 242 14-3-3 family AT5G38480 67.5 5.6e-83 304.7
Car04g01734 . 8 213 14-3-3 family AT5G38480 62.6 6.8e-73 271.2
Car05g00394 . 1 115 14-3-3 family AT5G38480 76.5 1.3e-44 177.2
Car09g00495 CCT,CST 4 242 14-3-3 family AT1G35160 90.4 9.5e-119 423.7
Car05g00457 CCT,CST 3 242 14-3-3 family AT1G35160 89.6 6.2e-118 421.0
Car12g00154 CCT,CST 6 242 14-3-3 family AT1G35160 90.7 8.1e-118 420.6
Car01g01232 CCT,CST 4 242 14-3-3 family AT1G35160 88.7 3.1e-117 418.7
Car01g00402 . 6 240 14-3-3 family AT1G35160 87.2 3.0e-112 402.1
Car05g00505 . 11 246 14-3-3 family AT1G35160 75.4 9.3e-98 354.0
Car12g00168 . 1 246 14-3-3 family AT1G35160 72.4 1.3e-96 350.1
Car19g00808 . 2 237 14-3-3 family AT1G35160 71.8 9.0e-93 337.4
Car11g01576 . 2 237 14-3-3 family AT1G35160 71.0 2.2e-91 332.8
Car12g00098 . 42 277 14-3-3 family AT1G35160 71.8 4.2e-90 328.6
Car05g00448 CCT,ECH 5 236 14-3-3 family AT1G35160 69.7 5.5e-90 328.2
Car01g01226 CCT,ECH 5 236 14-3-3 family AT1G35160 68.4 1.7e-83 306.6
Car04g01734 . 8 204 14-3-3 family AT1G35160 61.1 2.4e-69 259.6
Car05g00394 . 1 111 14-3-3 family AT1G35160 81.1 1.3e-46 184.1
Car01g00402 . 5 254 14-3-3 family AT5G16050 85.6 4.0e-116 414.8
Car09g00495 CCT,CST 4 251 14-3-3 family AT5G16050 81.5 2.4e-108 389.0
Car12g00154 CCT,CST 3 253 14-3-3 family AT5G16050 78.9 6.9e-108 387.5
Car05g00457 CCT,CST 3 253 14-3-3 family AT5G16050 78.1 3.4e-107 385.2
Car01g01232 CCT,CST 4 251 14-3-3 family AT5G16050 78.7 2.5e-105 379.0
Car05g00505 . 10 244 14-3-3 family AT5G16050 71.5 3.4e-91 332.0
Car12g00168 . 10 248 14-3-3 family AT5G16050 69.5 1.3e-90 330.1
Car19g00808 . 1 246 14-3-3 family AT5G16050 66.7 5.7e-86 314.7
Car12g00098 . 41 284 14-3-3 family AT5G16050 66.3 1.8e-84 309.7
Car11g01576 . 1 246 14-3-3 family AT5G16050 65.5 2.4e-84 309.3
Car05g00448 CCT,ECH 2 247 14-3-3 family AT5G16050 64.1 5.3e-84 308.1
Car01g01226 CCT,ECH 5 239 14-3-3 family AT5G16050 63.3 1.2e-75 280.4
Car04g01734 . 3 209 14-3-3 family AT5G16050 54.1 1.5e-62 236.9
Car05g00394 . 1 111 14-3-3 family AT5G16050 77.5 3.5e-43 172.6
Car05g00505 . 9 264 14-3-3 family AT5G10450 83.2 2.7e-115 412.1
Car12g00168 . 1 246 14-3-3 family AT5G10450 85.8 4.2e-113 404.8
Car12g00154 CCT,CST 8 251 14-3-3 family AT5G10450 78.0 4.7e-104 374.8
Car01g01232 CCT,CST 4 242 14-3-3 family AT5G10450 79.2 8.0e-104 374.0
Car09g00495 CCT,CST 4 250 14-3-3 family AT5G10450 75.8 1.8e-103 372.9
Car05g00457 CCT,CST 1 251 14-3-3 family AT5G10450 76.2 3.1e-103 372.1
Car01g00402 . 7 259 14-3-3 family AT5G10450 73.6 1.2e-102 370.2
Car19g00808 . 1 238 14-3-3 family AT5G10450 66.4 1.2e-86 317.0
Car11g01576 . 1 238 14-3-3 family AT5G10450 66.4 2.6e-86 315.8
Car05g00448 CCT,ECH 5 236 14-3-3 family AT5G10450 66.8 1.7e-85 313.2
Car12g00098 . 46 277 14-3-3 family AT5G10450 65.5 6.6e-82 301.2
Car01g01226 CCT,ECH 5 236 14-3-3 family AT5G10450 64.3 1.8e-79 293.1
Car04g01734 . 3 204 14-3-3 family AT5G10450 57.1 6.6e-66 248.1
Car05g00394 . 1 111 14-3-3 family AT5G10450 71.2 5.7e-41 165.2
Car01g00402 . 4 260 14-3-3 family AT3G02520 90.7 3.8e-127 451.4
Car09g00495 CCT,CST 5 258 14-3-3 family AT3G02520 85.9 1.5e-118 422.9
Car12g00154 CCT,CST 6 259 14-3-3 family AT3G02520 85.1 2.1e-117 419.1
Car05g00457 CCT,CST 6 252 14-3-3 family AT3G02520 86.3 5.2e-116 414.5
Car01g01232 CCT,CST 5 258 14-3-3 family AT3G02520 83.2 1.5e-115 412.9
Car05g00505 . 10 252 14-3-3 family AT3G02520 72.3 7.6e-99 357.5
Car12g00168 . 10 248 14-3-3 family AT3G02520 74.1 4.9e-98 354.8
Car19g00808 . 4 238 14-3-3 family AT3G02520 73.4 6.2e-93 337.8
Car12g00098 . 39 301 14-3-3 family AT3G02520 68.8 1.8e-92 336.3
Car05g00448 CCT,ECH 1 249 14-3-3 family AT3G02520 68.7 4.0e-92 335.1
Car11g01576 . 1 249 14-3-3 family AT3G02520 70.0 2.6e-91 332.4
Car01g01226 CCT,ECH 1 239 14-3-3 family AT3G02520 67.2 4.0e-84 308.5
Car04g01734 . 8 204 14-3-3 family AT3G02520 61.1 5.6e-70 261.5
Car05g00394 . 1 111 14-3-3 family AT3G02520 76.6 1.5e-43 173.7
Car05g00505 . 9 247 14-3-3 family AT5G65430 89.1 1.8e-116 416.0
Car12g00168 . 9 246 14-3-3 family AT5G65430 87.0 1.4e-113 406.4
Car05g00457 CCT,CST 3 242 14-3-3 family AT5G65430 79.7 2.6e-104 375.6
Car09g00495 CCT,CST 8 242 14-3-3 family AT5G65430 79.7 1.3e-103 373.2
Car12g00154 CCT,CST 1 242 14-3-3 family AT5G65430 79.4 2.2e-103 372.5
Car01g00402 . 7 241 14-3-3 family AT5G65430 78.8 3.8e-103 371.7
Car01g01232 CCT,CST 8 242 14-3-3 family AT5G65430 79.7 6.5e-103 370.9
Car19g00808 . 1 238 14-3-3 family AT5G65430 68.9 7.0e-89 324.3
Car11g01576 . 1 238 14-3-3 family AT5G65430 68.9 1.5e-88 323.2
Car05g00448 CCT,ECH 5 236 14-3-3 family AT5G65430 68.9 1.4e-86 316.6
Car12g00098 . 46 277 14-3-3 family AT5G65430 67.7 2.0e-83 306.2
Car01g01226 CCT,ECH 5 236 14-3-3 family AT5G65430 66.0 7.0e-81 297.7
Car04g01734 . 8 204 14-3-3 family AT5G65430 60.0 8.8e-68 254.2
Car05g00394 . 1 111 14-3-3 family AT5G65430 73.9 4.9e-42 168.7
Car19g00808 . 1 261 14-3-3 family AT2G42590 81.7 7.6e-118 420.6
Car11g01576 . 1 259 14-3-3 family AT2G42590 80.5 3.2e-116 415.2
Car05g00448 CCT,ECH 4 242 14-3-3 family AT2G42590 77.8 2.4e-103 372.5
Car12g00098 . 42 291 14-3-3 family AT2G42590 74.8 2.0e-102 369.4
Car01g01226 CCT,ECH 3 240 14-3-3 family AT2G42590 73.1 2.5e-97 352.4
Car01g00402 . 8 248 14-3-3 family AT2G42590 73.4 3.2e-92 335.5
Car09g00495 CCT,CST 8 247 14-3-3 family AT2G42590 71.3 1.6e-91 333.2
Car12g00154 CCT,CST 8 248 14-3-3 family AT2G42590 71.0 2.7e-91 332.4
Car01g01232 CCT,CST 8 245 14-3-3 family AT2G42590 70.6 6.7e-90 327.8
Car05g00457 CCT,CST 8 248 14-3-3 family AT2G42590 70.5 1.1e-89 327.0
Car12g00168 . 11 248 14-3-3 family AT2G42590 63.9 1.6e-80 296.6
Car05g00505 . 11 244 14-3-3 family AT2G42590 65.0 2.8e-80 295.8
Car04g01734 . 6 208 14-3-3 family AT2G42590 65.1 4.1e-79 292.0
Car05g00394 . 1 115 14-3-3 family AT2G42590 83.5 6.1e-51 198.4
Car05g00448 CCT,ECH 1 241 14-3-3 family AT1G22300 81.3 7.9e-106 380.6
Car11g01576 . 6 242 14-3-3 family AT1G22300 78.1 3.1e-102 368.6
Car19g00808 . 6 242 14-3-3 family AT1G22300 78.1 4.1e-102 368.2
Car12g00098 . 43 282 14-3-3 family AT1G22300 76.3 1.3e-100 363.2
Car01g01226 CCT,ECH 1 240 14-3-3 family AT1G22300 72.1 1.7e-92 336.3
Car01g00402 . 4 246 14-3-3 family AT1G22300 70.8 2.5e-91 332.4
Car12g00154 CCT,CST 8 246 14-3-3 family AT1G22300 70.3 1.1e-88 323.6
Car01g01232 CCT,CST 8 245 14-3-3 family AT1G22300 69.3 3.3e-88 322.0
Car09g00495 CCT,CST 8 245 14-3-3 family AT1G22300 68.9 1.3e-87 320.1
Car05g00457 CCT,CST 8 246 14-3-3 family AT1G22300 69.0 8.2e-87 317.4
Car05g00505 . 11 244 14-3-3 family AT1G22300 66.2 3.7e-79 292.0
Car04g01734 . 5 212 14-3-3 family AT1G22300 64.2 6.3e-79 291.2
Car12g00168 . 11 248 14-3-3 family AT1G22300 63.9 6.3e-79 291.2
Car05g00394 . 1 115 14-3-3 family AT1G22300 78.3 1.2e-45 180.6
Car05g00393 . 1 101 14-3-3 family AT1G22300 75.2 4.1e-38 155.6
Car05g00448 CCT,ECH 1 245 14-3-3 family AT1G34760 80.8 7.9e-106 380.6
Car19g00808 . 6 246 14-3-3 family AT1G34760 80.9 2.3e-105 379.0
Car12g00098 . 43 285 14-3-3 family AT1G34760 80.7 1.5e-104 376.3
Car11g01576 . 6 246 14-3-3 family AT1G34760 80.1 2.5e-104 375.6
Car01g01226 CCT,ECH 1 243 14-3-3 family AT1G34760 73.3 9.1e-94 340.5
Car01g00402 . 4 250 14-3-3 family AT1G34760 70.9 1.4e-89 326.6
Car09g00495 CCT,CST 12 249 14-3-3 family AT1G34760 71.8 4.0e-89 325.1
Car01g01232 CCT,CST 8 249 14-3-3 family AT1G34760 69.8 1.1e-88 323.6
Car12g00154 CCT,CST 8 245 14-3-3 family AT1G34760 71.4 1.1e-88 323.6
Car05g00457 CCT,CST 8 245 14-3-3 family AT1G34760 71.8 3.3e-88 322.0
Car04g01734 . 5 208 14-3-3 family AT1G34760 69.0 3.6e-82 302.0
Car05g00505 . 11 246 14-3-3 family AT1G34760 64.4 5.4e-78 288.1
Car12g00168 . 11 247 14-3-3 family AT1G34760 63.3 2.0e-77 286.2
Car05g00394 . 1 115 14-3-3 family AT1G34760 82.6 8.9e-49 191.0
Car05g00393 . 1 101 14-3-3 family AT1G34760 77.2 7.1e-38 154.8
Car12g00098 . 40 301 14-3-3 family AT1G26480 83.2 1.1e-118 423.3
Car19g00808 . 3 242 14-3-3 family AT1G26480 81.7 2.4e-108 389.0
Car11g01576 . 3 242 14-3-3 family AT1G26480 80.0 1.0e-106 383.6
Car05g00448 CCT,ECH 4 249 14-3-3 family AT1G26480 77.2 1.6e-104 376.3
Car01g01226 CCT,ECH 3 244 14-3-3 family AT1G26480 71.9 1.9e-94 342.8
Car12g00154 CCT,CST 8 260 14-3-3 family AT1G26480 72.0 8.2e-93 337.4
Car05g00457 CCT,CST 8 260 14-3-3 family AT1G26480 71.7 1.4e-92 336.7
Car09g00495 CCT,CST 8 256 14-3-3 family AT1G26480 71.3 3.1e-92 335.5
Car01g01232 CCT,CST 8 247 14-3-3 family AT1G26480 73.3 9.0e-92 334.0
Car01g00402 . 5 256 14-3-3 family AT1G26480 71.7 4.5e-91 331.6
Car04g01734 . 2 208 14-3-3 family AT1G26480 74.0 5.0e-90 328.2
Car05g00505 . 11 244 14-3-3 family AT1G26480 66.2 2.1e-80 296.2
Car12g00168 . 11 244 14-3-3 family AT1G26480 65.4 5.1e-79 291.6
Car05g00394 . 1 115 14-3-3 family AT1G26480 93.9 1.0e-55 214.2
Car05g00393 . 1 101 14-3-3 family AT1G26480 79.2 1.2e-38 157.5
Car05g00448 CCT,ECH 1 234 14-3-3 family AT1G78220 51.1 1.6e-63 240.0
Car12g00098 . 43 275 14-3-3 family AT1G78220 51.7 2.8e-63 239.2
Car19g00808 . 6 236 14-3-3 family AT1G78220 50.4 2.3e-62 236.1
Car11g01576 . 6 236 14-3-3 family AT1G78220 50.4 4.0e-62 235.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00402 Car_Chr01 FPKM 3.99766 5.007689 0.574438 0.195931 0.423193 0.525557 0.597396 0.0 0.0 0.0