Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00405 ATGGGTACCTCTTTGTTGTCGTTTTCAGTGATCAAATGGTTCTCTTCTTGTATAAACACTTTGCCGATACTTACTTCCAAGCTCTTTTTGCTTTTCTGCTTCGTTATTTTATTTCAGACTGAAGTTATTTTGGGCGATTCAGATAAATCGGTGCTTCTTCAGTTCAAAAATGCTGTTTCTGATCCATCGGGGTTGCTTGCGAGTTGGACTGCGAGTGGGTCTGATTGCTGTGTCTGGTTTGGCGTTTCTTGCGACTTGAATTCTCGGGTTGTGTCACTCAACATTTCCGGGAATGGCGGTGGAGGTCATTTGTGCTCTGATTCTTCTAAATTTCCTCTTTATGGGCTTGGAATTAGGAGGGGTTGTGTGGGTATTAGAGGCTCACTGATTGGGAAGATTCCGCCGGTGATCGGGAAGCTCACTGAGCTTAGGTCTTTGTCGCTTCCGTTTAATGGTTTTGAAGGCGAAATTCCTCCTGGAATTTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTAACTGGGGTGCTTCGTGATGATTTCCTTAGACTGAGCAAGTTGCGGGTTCTTAATCTTGGATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTGCGAGTTTAGAGATCTTGAATTTAGCTGGAAATCGATTGAATGGGATAATTCCACAGTTTGTTGGTCGATTGAGAGGGCTCTACTTGTCTTTGAATCTTTTTTCAGGAACCATTCCGAGTGAGCTTGGAAATAACTGTGGAAAGCTTGAGCATCTCGACCTCTCTGGTAATTATTTGGTCAGTGGGATTCCAAGAAATTTAGGAAATTGCAATCAGTTGAAGACACTGTTGCTGTATTCTAATATGTTGGAGGAAGCCATTCCAGCTGACATTGCTAAGTTACAGAAGCTAGAAGTGCTTGATCTTTCAAGGAACAGCCTCAGTGGTCCGATACCGTCTCAGCTGGGAAACTGCCAGCAGTTGTCTGTTCTTGTGCTCTCGAATCTCTTCGATCCAATTCCGAAGATCAATTACACAGACGAAGACGAACTTAGTGATGATGGTTTTAACTATTTTGCAGGCGGTATACCTGAGTCGATAACAACCCTTCCAAAGCTGAAGATACTGTGGGCTCCTAATTCAAATCTCGAAGGCAGATTCCCTTCCAAATGGGGTAAGTGTGAAAGCTTGGAGATGATTAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCTAGTGAGCTTAGCGTCTGCAAAAAGCTCAAAGTCCTTGATTTAAGCTCCAACCGGCTTTCTGGTGAGCTCGATAAAAACCTTCCAGTTCCTTATATGTCTCTGTTTGATCTTAGTGGTAACCACTTTATTGGAGATATTCCTGTGTTCTGTGGCAATGATTGCTCGCCACCGATGTTATTTTCAAGGGGATATTTGGATCTTGATGATCCATCATCTCGATATCTTGCGTTTTTTACCACTAGTATTCGAGGTGCAACCCCTTTTGAATTTCTTGGAGATGATGACCTGATAGTACATAACTTAGGGGAGAATAACTTTACAGGAAATCTTCTGTCGTTTCCAATTCCACGTGAAAGACTGGGTAAGAAAACTGTTTATGCTTATCTTGTGGGTGGTAATAAGCTCACCGGGCCATTCCCTGATAGTATATTTGAGAAATGTGAGGATATGGGAGGACTGATCTTCAATGTTAGCAATAACAAGATATCTGGTCCATTTTCTAAGTCAATTGGTAAAAACTGTGGTTCTCTTAAGTTCTTGGATGCATCTGGTAATCAGATGACTGGCGAGGTACCTCCCAGCTTTGGTGATCTATTAGCTCTGAATCACCTGAACCTGAGTTGGAACAAGTTTCAGTATCACATACCGGCCTCTCTCGGACAGATTGCTGGTTTAAAGTACCTTTGTTTGGCTGGCAATAGCTTTAATGGTTCTATACCCTCGACCTTCGGAAAGTTGCAGGCTTTGGAGTTGCTTGATCTTTCGTATAACGATCTTTCAGGTGGAATTCCAGTCGATCTTGTTAAATTGAGAGGCCTAAAAGTTCTGCTGCTCAGCAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATGTTACTACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCATTGCCATCAAACAACATGATTAAATGTAGTGGTGCGATTGGGAACCCGTACCTACGATCGTGCCATATGTTTTCACTGGCAGTGCCATCGTCTGAAATGCGAGGTTCAGTTGGCGACCCGAGTAGTCTTGCAGCTTCACCGTCTGATGTTGTACCGCAGACCGGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCCGCCTCCGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTGTTTCTATATACCCGAAAGTGGAATTCGAGGTCTAAAGTAATTGGATCAATGAGAAGGGAAGTCACGGTTTTTACTGATATTGGGGTTTCTTTGACATTTGAGAATGTCGTGCGTGCCACGAACAATTTTAATACCAGTAACTGCATTGGCAGTGGAGGGTTTGGAGCAACTTACAAAGCAGAGATTGCATCGGGAGTGCTACTTGCAATAAAACGCCTCGCTGTTGGTCGATTTCAAGGCGTCCAACAGTTCGATGCAGAGATTAAAACTCTTGGAAGGCTGCGCCACCCGAACCTCGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCTTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAGTTCATCCAGGAGAGATCTACAAGAGCAGTGGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTTGCATATCTTCATGATCAGTGCGTACCACGAGTCCTCCACCGCGACGTGAAGCCGAGCAATATACTACTAGACGATGATTTCAATGCCTATCTCTCTGATTTCGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACAGGTGTGGCTGGAACATTCGGCTACGTCGCTCCCGAATACGCCATGACTTGTCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTACGGTAATGGCTTTAACATTGTAGCTTGGGCATGTATGCTGCTTCCACAGGGACGTGCCAAGGAATTCTTCACATCAGGGTTATGGGAGGTAGGCCCCCATGATGATCTGGTTGAAGTATTACACTTAGCAGTTGTGTGTACAGTCGATTCTCTGTCGACGAGGCCGACGATGAAGCAGGTGGTACGGCGGCTTAAGCAGCTTCAACCGCCGTCATGTTAG 3402 44.36 MGTSLLSFSVIKWFSSCINTLPILTSKLFLLFCFVILFQTEVILGDSDKSVLLQFKNAVSDPSGLLASWTASGSDCCVWFGVSCDLNSRVVSLNISGNGGGGHLCSDSSKFPLYGLGIRRGCVGIRGSLIGKIPPVIGKLTELRSLSLPFNGFEGEIPPGIFGLENLEVLDLEGNSVTGVLRDDFLRLSKLRVLNLGFNRLTGEIPSSLSGCASLEILNLAGNRLNGIIPQFVGRLRGLYLSLNLFSGTIPSELGNNCGKLEHLDLSGNYLVSGIPRNLGNCNQLKTLLLYSNMLEEAIPADIAKLQKLEVLDLSRNSLSGPIPSQLGNCQQLSVLVLSNLFDPIPKINYTDEDELSDDGFNYFAGGIPESITTLPKLKILWAPNSNLEGRFPSKWGKCESLEMINLAGNYLYGELPSELSVCKKLKVLDLSSNRLSGELDKNLPVPYMSLFDLSGNHFIGDIPVFCGNDCSPPMLFSRGYLDLDDPSSRYLAFFTTSIRGATPFEFLGDDDLIVHNLGENNFTGNLLSFPIPRERLGKKTVYAYLVGGNKLTGPFPDSIFEKCEDMGGLIFNVSNNKISGPFSKSIGKNCGSLKFLDASGNQMTGEVPPSFGDLLALNHLNLSWNKFQYHIPASLGQIAGLKYLCLAGNSFNGSIPSTFGKLQALELLDLSYNDLSGGIPVDLVKLRGLKVLLLSNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLRSCHMFSLAVPSSEMRGSVGDPSSLAASPSDVVPQTGGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVIGSMRREVTVFTDIGVSLTFENVVRATNNFNTSNCIGSGGFGATYKAEIASGVLLAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLPQGRAKEFFTSGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2313601 2317002 - Carg20394-RA Car01g00405 141269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00405 1133 Pfam Protein kinase domain 856 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00405 1133 Pfam Leucine Rich repeat 423 439 IPR001611 GO:0005515
Car01g00405 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 974 986 IPR008271 GO:0004672|GO:0006468
Car01g00405 1133 ProSitePatterns Protein kinases ATP-binding region signature. 860 882 IPR017441 GO:0005524
Car01g00405 1133 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Car01g00405 1133 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515
Car01g00405 1133 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515
Car01g00405 1133 Pfam Leucine rich repeat 641 700 IPR001611 GO:0005515
Car01g00405 1133 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Car01g00405 1133 ProSiteProfiles Protein kinase domain profile. 854 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00405 Car-Chr1:2313601 Car14g01670 Car-Chr14:13300897 1.33E-144 dispersed
Car15g00758 Car-Chr15:4281191 Car01g00405 Car-Chr1:2313601 0 transposed
Car01g00405 Car-Chr1:2313601 Car14g01013 Car-Chr14:8469010 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88584 PF00069 Pkinase 4.20E-43 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00405 - - csv:101218045 1891.32