Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00429 ATGGAGCAAGGAGCTATTGAGCCAAAGGGCACGGCGGACATAGACAATTCAAGCTCATACAAAAAGATCATAATAGTTGCAGCCATTGCAGCCGGAATCCAATTCGGTTGGGCTCTGCAGCTCTCATTACTAACACCATACGTCCAACAACTCGGTGTTTCCCACACATGGTCAGCTTTCATTTGGCTCTGTGGTCCATTGTCCGGCCTAATTGTACAGCCAACCGTCGGCTACTACAGCGATCGATGTACCTCGAGGTTCGGTCGTCGTCGTCCCTTCATCGTAGCCGGAGCTATATCGGTAGCCGCCGCAGTTTTCCTCATTGGCTTTGCAGCAGACATTGGGCATTCACTAGGAGATCAACTCACCAAACCCACAAAACCAAGGGCAGTGGCTATCTTCGTGGTCGGATTTTGGGTTCTTGATGTCGCTAACAACATGTTACAAGGCCCTTGTCGAGCTTTGTTAGCTGATATGTCATGTAGCAACCAAAAGAAAATGAGGGTCGCTAATGGATTCTTCTCATTCTTTATGGGCGTAGGGAATGTCTTAGGGTATGCAGCAGGGTCCAATAGCTCACTCTATAAGCTCCTTCCATTTACCATCACTAAAGCTTGTGATGCTTATTGCGCTAATCTCAAGACATGTTTTTTAATCGACATTGTGTTGCTGCTAACCATTACAACAGCCGCCGTGTTGTTAGTGAGCGAAAGGCCTTATGAGAACGCTATTGACAACGAAACAGAGCCGTTTTTTGGGCAATTGTGTGGGGCGCTCAAGCGGCTATCAAAGCCCATGTGGGTGTTGTTGCTTGTCACAGCATTGAATTGGATTGGTTGGTTTCCTTTTATAATGTATGACACGGATTGGATGGGCGCTGAAGTGTATGGTGGCAAGCCACAGGGGACGCCAGAACAAGAGAAGAATTATGACCTTGGTGTGCGAGCAGGGGCGCTTGGATTGATGGTTAACTCATTTGTTCTTGGGTTTACAGCATTGGGTATTGAGCCAATTAGCCGTGTGGTTGGTGGGCTAAGATGGGTTTGGGGAATTGTGAATGTTGTATTGGCAATTTGTATGGGGTGTACGGTGGCTGTGACGAAGGCGGCAGAGAAATGGAGGGCTGTTCACGGCGGCTTGGCGCTTCCTCCGCCGGGTGTTAAAGGTGGCGCCTTTGCGATCTTTGCGATATTGGGTGTTCCACTATCGGTGACTTATAGTGTTCCATTTGCTCTTGCGTCGATCTTTTCGTTGTCATCGAATGCAGGGCAAGGGCTGTCTTTGGGGATTTTGAATCTGTTTATAGTGATACCGCAGTTCTTTGTGTCGGCTGTTAGTGGGCCGCTTGACGCTGCTCTTGGAGGGGGGAATTTGCCGGCTTTTGTTATGGGGGGGATTGCTGCGGCTGTGAGTGCTGTGTGCGCTATGTTTTTGCTTCCTGATCCGCCGCCGGAGACTCATGTTGCTGTCACGATGGGCGCCGGGCATTGA 1491 49.43 MEQGAIEPKGTADIDNSSSYKKIIIVAAIAAGIQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGAISVAAAVFLIGFAADIGHSLGDQLTKPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCSNQKKMRVANGFFSFFMGVGNVLGYAAGSNSSLYKLLPFTITKACDAYCANLKTCFLIDIVLLLTITTAAVLLVSERPYENAIDNETEPFFGQLCGALKRLSKPMWVLLLVTALNWIGWFPFIMYDTDWMGAEVYGGKPQGTPEQEKNYDLGVRAGALGLMVNSFVLGFTALGIEPISRVVGGLRWVWGIVNVVLAICMGCTVAVTKAAEKWRAVHGGLALPPPGVKGGAFAIFAILGVPLSVTYSVPFALASIFSLSSNAGQGLSLGILNLFIVIPQFFVSAVSGPLDAALGGGNLPAFVMGGIAAAVSAVCAMFLLPDPPPETHVAVTMGAGH 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2464185 2465675 + Carg20418-RA Car01g00429 141293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00429 496 Pfam MFS/sugar transport protein 28 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00429 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 778.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00429 Car-Chr1:2464185 Car12g00209 Car-Chr12:1317264 1.87E-160 dispersed
Car05g00778 Car-Chr5:6094136 Car01g00429 Car-Chr1:2464185 0 transposed
Car01g00429 Car-Chr1:2464185 Car05g00798 Car-Chr5:7151294 1.18E-138 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car01g00429 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.7 8.9e-181 630.6
Car05g00778 . 26 501 Sucrose Transporter Gene Family AT1G22710 62.1 6.6e-176 614.4
Car12g00209 CCT 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 4.9e-139 491.9
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 1.0e-178 623.6
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT2G14670 62.4 3.6e-171 598.6
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 8.4e-136 481.1
Car01g00429 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.6e-149 526.6
Car05g00778 . 23 415 Sucrose Transporter Gene Family AT1G66570 60.3 1.1e-142 503.8
Car05g00798 . 152 604 Sucrose Transporter Gene Family AT2G02860 67.3 1.2e-179 626.7
Car12g00703 . 152 600 Sucrose Transporter Gene Family AT2G02860 69.4 1.5e-179 626.3
Car01g00429 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.3 2.1e-163 572.8
Car05g00778 . 17 485 Sucrose Transporter Gene Family AT5G06170 59.2 2.2e-160 562.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.8e-175 612.8
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT5G43610 62.2 5.8e-169 591.3
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Car12g00209 CCT 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 3.6e-206 714.9
Car05g00778 . 17 495 Sucrose Transporter Gene Family AT1G09960 50.7 9.0e-133 471.1
Car01g00429 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 2.1e-129 459.9
Car01g00429 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.9 8.1e-174 607.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-169 591.7
Car12g00209 CCT 27 503 Sucrose Transporter Gene Family AT1G71880 51.2 4.3e-135 478.8
Car01g00429 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 8.7e-168 587.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71890 58.7 6.9e-165 577.8
Car01g00429 . 5 496 Sucrose Transporter Gene Family AT1G71880 59.9 8.1e-174 607.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71880 59.7 4.6e-169 591.7
Car12g00209 CCT 27 503 Sucrose Transporter Gene Family AT1G71880 51.2 4.3e-135 478.8
Car01g00429 . 11 493 Sucrose Transporter Gene Family AT1G22710 62.7 8.9e-181 630.6
Car05g00778 . 26 501 Sucrose Transporter Gene Family AT1G22710 62.1 6.6e-176 614.4
Car12g00209 CCT 28 492 Sucrose Transporter Gene Family AT1G22710 51.2 4.9e-139 491.9
Car05g00798 . 152 604 Sucrose Transporter Gene Family AT2G02860 67.3 1.2e-179 626.7
Car12g00703 . 152 600 Sucrose Transporter Gene Family AT2G02860 69.4 1.5e-179 626.3
Car12g00209 CCT 24 499 Sucrose Transporter Gene Family AT1G09960 73.0 3.6e-206 714.9
Car05g00778 . 17 495 Sucrose Transporter Gene Family AT1G09960 50.7 9.0e-133 471.1
Car01g00429 . 19 480 Sucrose Transporter Gene Family AT1G09960 51.7 2.1e-129 459.9
Car01g00429 . 13 485 Sucrose Transporter Gene Family AT1G71890 59.6 8.7e-168 587.4
Car05g00778 . 23 501 Sucrose Transporter Gene Family AT1G71890 58.7 6.9e-165 577.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT5G43610 62.6 1.8e-175 612.8
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT5G43610 62.2 5.8e-169 591.3
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT5G43610 50.7 1.1e-132 470.7
Car01g00429 . 13 410 Sucrose Transporter Gene Family AT1G66570 61.0 1.6e-149 526.6
Car05g00778 . 23 415 Sucrose Transporter Gene Family AT1G66570 60.3 1.1e-142 503.8
Car01g00429 . 12 480 Sucrose Transporter Gene Family AT2G14670 63.1 1.0e-178 623.6
Car05g00778 . 23 485 Sucrose Transporter Gene Family AT2G14670 62.4 3.6e-171 598.6
Car12g00209 CCT 27 492 Sucrose Transporter Gene Family AT2G14670 51.4 8.4e-136 481.1
Car01g00429 . 15 480 Sucrose Transporter Gene Family AT5G06170 60.3 2.1e-163 572.8
Car05g00778 . 17 485 Sucrose Transporter Gene Family AT5G06170 59.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00429 Car_Chr01 FPKM 6.400406 8.366864 9.187148 8.581345 14.360826 13.888199 14.247551 5.614419 5.055912 5.269547