Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g00434 | ATGGCCTCCGATTCCAACTCCCCTGAAACCTCCTCTGTTTTCGACACCCTCATCGGAAACAGAGACCTCTCTCTCTTCATGCCCTTCCTCTTCGGCTTCTCCGCCGCCGACCCACTTCAACAATCTCAAAACCCCGCCGACCCAGATCGCCAAAACGCCAATCGGAGCGACAGGATATTTCTGGTCAACCCTTTTACTCAGAGCATGGTCGTGATCGAGGGGCGTTCGAGCTTGGAAGCACTGATGCGTGATCTCGGCGGGAAGGACGGCCAGCCGCCGGCGTCCAGAGCATCCATAGAAGCGCTCCCCACCGTTCAAATCATGGCAGAGGAGTCGGGTTGTGAGTGTGTGATCTGCTTGGATGAGTGGGAGATTGGGGCGGTGGCTAAAGAACTGCCCTGCGGACACAAATTTCATCCCGATTGTATAGAGAAATGGCTTGGGATTCATGGGAATTGCCCTCTTTGTAGGTGCAAGCTGCCGGATGATGTTGATCGGAAGAACAACGAGGGGCGGCGGGCGAGGGAGATTTGGGTCGGTTTTTCTTTCACTAATGATCGGAGAAGTGAGGGTTCCAATGGAGTTTCTTCAGATCATGGAGCTTAG | 606 | 54.29 | MASDSNSPETSSVFDTLIGNRDLSLFMPFLFGFSAADPLQQSQNPADPDRQNANRSDRIFLVNPFTQSMVVIEGRSSLEALMRDLGGKDGQPPASRASIEALPTVQIMAEESGCECVICLDEWEIGAVAKELPCGHKFHPDCIEKWLGIHGNCPLCRCKLPDDVDRKNNEGRRAREIWVGFSFTNDRRSEGSNGVSSDHGA | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2488760 | 2489365 | + | Carg20423-RA | Car01g00434 | 141298 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g00434 | 201 | ProSiteProfiles | Zinc finger RING-type profile. | 116 | 157 | IPR001841 | - | |
| Car01g00434 | 201 | Pfam | Ring finger domain | 115 | 157 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00434 | Car-Chr1:2488760 | Car15g00265 | Car-Chr15:1452823 | 2.59E-32 | dispersed | |
| Car01g00434 | Car-Chr1:2488760 | Car18g01056 | Car-Chr18:10804267 | 1.21E-48 | wgd | |
| Car01g00434 | Car-Chr1:2488760 | Car04g01702 | Car-Chr4:9775204 | 5.44E-46 | wgd | |
| Car01g00434 | Car-Chr1:2488760 | Car05g00775 | Car-Chr5:6032145 | 3.40E-70 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g00434 | - | K11982 | zju:107429014 | 246.899 |