Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00437 ATGGAGTTTCATATGCTCTTTCCGGTGGTCTTTTTCTCACTCCTTTCGTCCACCGCGGCAGTCGGCGAATGGACCAACGCTCACGCCACCTTCTACGGCGGCAGCGATGCTTCTGGGACAATGGGCGGAGCTTGTGGGTATGGGAATCTGTACAGTCAAGGGTTCGGCCCGAACACCGCCGCTGTTAGCACTGCCCTGTTCAACAATGGCTTGAGCTGCGGGTCTTGCTATGAGATCAAGTGCGTGGACGACCCTCAATGGTGTCTTCCAGGCTCTGTTTTGGTAACCGCTACCAATTTCTGTCCGCCCAATAACGCCCTACCCAACACCGCCGGCGGCTGGTGCAACCCTCCTCTGCACCATTTTGACCTCGCCCAGCCTGTGTTCCTCCACATTGCTCAATACCATGCCGGAATCATCCCCGTCGCTTATCGGAGGGCTCCGTGCAAAAGAAGGGGAGGAATAAGGTTCACAATCAACGGCCATTCCTACTTCAATTTGGTGCTAATAACAAATGTGGGCGGCGCCGGAGATGTCCGGGCAGTGTCGATTAAAGGGGCGAGAAGTGGGTGGCAGTCAATGTCGAGAAATTGGGGGCAGAATTGGCAGAGCAACAACTTTTTGGATGGTCAACCCCTCTCTTTTAGGCTCACCACTAGCGACGGCCGAACACTTGTTTCTAGAAACGTGGCTCCGGCCGGTTGGTCCTTTGGCCAGACTTTCACCGGCCGTCAATTCCGGTGA 744 55.24 MEFHMLFPVVFFSLLSSTAAVGEWTNAHATFYGGSDASGTMGGACGYGNLYSQGFGPNTAAVSTALFNNGLSCGSCYEIKCVDDPQWCLPGSVLVTATNFCPPNNALPNTAGGWCNPPLHHFDLAQPVFLHIAQYHAGIIPVAYRRAPCKRRGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGARSGWQSMSRNWGQNWQSNNFLDGQPLSFRLTTSDGRTLVSRNVAPAGWSFGQTFTGRQFR 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2498011 2498834 - Carg20426-RA Car01g00437 141301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00437 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Car01g00437 247 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Car01g00437 247 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Car01g00437 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Car01g00437 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Car01g00437 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Car01g00437 247 SMART dpbb_1 59 144 IPR007112 -
Car01g00437 247 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Car01g00437 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Car01g00437 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Car01g00437 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Car01g00437 247 PANTHER EXPANSIN 9 246 - -
Car01g00437 247 Pfam Lytic transglycolase 59 144 IPR009009 -
Car01g00437 247 SUPERFAMILY Barwin-like endoglucanases 23 172 IPR036908 -
Car01g00437 247 Gene3D - 10 150 IPR036908 -
Car01g00437 247 PANTHER EXPANSIN-A15 9 246 IPR002963 GO:0009664
Car01g00437 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Car01g00437 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Car01g00437 247 Gene3D - 154 246 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00437 Car-Chr1:2498011 Car10g00188 Car-Chr10:902985 2.78E-134 dispersed
Car04g02757 Car-Chr4:21230065 Car01g00437 Car-Chr1:2498011 3.84E-131 dispersed
Car20g00166 Car-Chr20:913776 Car01g00437 Car-Chr1:2498011 7.96E-37 dispersed
Car01g00437 Car-Chr1:2498011 Car18g01051 Car-Chr18:10776371 1.13E-127 wgd
Car01g00437 Car-Chr1:2498011 Car04g01707 Car-Chr4:9792612 4.48E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00437 - K20628 csv:101202833 446.047