Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00458 ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTTCCGCAGAATTATTTGCGAGTAGTGGGGGAATTATCCAGTAACTCTGGCGAACAATTGGGTTTTCAGAACTCGGTGCATTCGGGGCTTGATCTGGATCTTGTTCGAATTCAAAGTTTTAATAAGAATGCGATTTTGCCTCATGATTTGTCTTCTTTTCCGGCAGAGATGATTAATTTTTCAAGGGATTCCAACGTTTTATCGGACCAAAGGCACATAATGTTGCGTCAAGAGCCAGAAGACCCTGCTCAATGCAGTAGGCAAATTCTGGCAGATGCTTCGTTGGGTTCTTTTGCCAACTCTTTGTTGAAAGCCTCTGGGGAAATTATGAATAATTCTTTGGGAGATTGGGTGGTGAACTGTGGAAGTAATTCTTTGGGAGGTGAAATGTTGAATGAGGAAGTAACGGATTCTACTGTATATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCAACCTCTTTTAACAATCCATCCAACGAAGCATTCATTCAGGATGGACAAAAGCGTGTAGCAGGAGAATTGCATTTGCCTCCAATTTACCAAAATAGTCTTCAGGGTGTTACTTCAGCCTCTATTGGAACTCAGGACATGGAAATGACATCCATCGTGCAGCATAATTTCACTGAAATTAACCAAACTGGTTCTTGTGAAGGCAGTGGAAATGAGCTTGCTCTTCTTCCTGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACAGATAGAACTTTCTATAACTGCCGCAGCTGGACTGGCGAATTGGGTTCAATTGCAAGAAAAACTGGTGAAGAATTGAGAACTTTTATGAGTGATTCCAATCCACAAGGTCTATCTCTGTCGCTTTCTTCGAATCCGCCATCTAAACTGCCCACCGCACAGTTTGAAGAATCAGAGGAATTACAGGAAAATATGACCGTGTTGAAAAATCCACAAGAATCCAAATCTGGCAAATCTGAGAGTTTTTGTAGATTACCAAACCCAACATCTATTGGCAATAAAAATCATGGGAAATCTCTTCAAGACGCGATGGGAGCTCCTATGAACACATATAGAAACACAGGGCCTCTTGGTCCCTTTACTGGTTATGCGACCATTTTAAAGAGTTCAAAATTCTTGAAGCCAGCCCAATTATTGTTGGACGAATTTTGTGGCTCGAATGGTCAAAAGTTTGTCCAACCATATGAAGTATTTGAGAAGACATCTGGGGAAGTTGGTCCCTCAGCGGTCCATAGTGCATTTAGAAACGAGGTTTTTAAAGAGAATAGTTCATGTGCTGAAGCCTCTACGTTCTGTGGTTCGAATGAGACAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCAGAGTATCAGCAAAAGAAAGCGAAACTTCTATATATCCTAGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTCTCATCCTTTGAATCAGTAGCTGGTCTTAGTTCTGCCACACCCTATATTTCCCTGGCGCTCAAGACAGTCTCTAGGCACTTCCGCTGTCTGAAGAACGCCATCTCAGAACAATTGAAGTATCTGAGGAAGGTATTAGGTGAGGATTTGTCATCCCCCTCCGCTGGGACAAGCGGCAGCAAAGGTGATGCGAATTCGGCTAGGTTGAAATACATGGAACAGAGCTTCCAAAAGCAAAAATCTGGCATGGTCAATATGGGATTCCTCGAATCCCAACATGTGTGGAGGCCGCAGAGAGGTCTTCCAGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACAGACACAGATAAGCACATGTTAGCCACTCAAACAGGCCTGTCTCGTAATCAGGTGTCAAATTGGTTCATAAATGCTCGAGTGCGAGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTGGAAACTAAGGGCATGGCCGAAATGAACAACAAAAGCCATGGTACGAAAGATGGTAGTTCTACAATAGAAAACACAGCCGGTTGGATCAGTAGTGAACAACAGCCTCTAAAAAACCATGGTGTTGCAAATGAAATTGCCAGTCATCATCTGCAGTGCTTGGGGGTGGATTCCTCAAGTGGCGATAGAAATGGAGTAGGCAGTAGCAACCAACAGTGTGATCAAGACAAACAATCCAAATTGGACCGAGGGATTCAGTCCAACATGGAAGGGGAATTGATGGGGTTCATGCCATATCGAGCCAGTCCGGCTGAGGTTGGAGGACTTGGATCTGTCTCTCTAACATTAGGACTTCGCCACCGAGTTGAGAGTGCCCACCATCAACAGCAGCATCACCAATTGCAGCAACAAGATGACCAACTAATACGCCACTATGGAGGCCAAATGATCCATGATTTTGTGGGGTAA 2481 43.85 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVVGELSSNSGEQLGFQNSVHSGLDLDLVRIQSFNKNAILPHDLSSFPAEMINFSRDSNVLSDQRHIMLRQEPEDPAQCSRQILADASLGSFANSLLKASGEIMNNSLGDWVVNCGSNSLGGEMLNEEVTDSTVYSLKPTCIGFQTSTSFNNPSNEAFIQDGQKRVAGELHLPPIYQNSLQGVTSASIGTQDMEMTSIVQHNFTEINQTGSCEGSGNELALLPVYRDQPNVLPYDSTGSWTDRTFYNCRSWTGELGSIARKTGEELRTFMSDSNPQGLSLSLSSNPPSKLPTAQFEESEELQENMTVLKNPQESKSGKSESFCRLPNPTSIGNKNHGKSLQDAMGAPMNTYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGQKFVQPYEVFEKTSGEVGPSAVHSAFRNEVFKENSSCAEASTFCGSNETNVSGVGSISSESHQPEYQQKKAKLLYILEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRCLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSARLKYMEQSFQKQKSGMVNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGTKDGSSTIENTAGWISSEQQPLKNHGVANEIASHHLQCLGVDSSSGDRNGVGSSNQQCDQDKQSKLDRGIQSNMEGELMGFMPYRASPAEVGGLGSVSLTLGLRHRVESAHHQQQHHQLQQQDDQLIRHYGGQMIHDFVG 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2663523 2666818 - Carg12281-RA Car01g00458 141322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00458 826 MobiDBLite consensus disorder prediction 729 746 - -
Car01g00458 826 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 74 793 - -
Car01g00458 826 SMART prehox3 388 546 IPR006563 -
Car01g00458 826 MobiDBLite consensus disorder prediction 297 318 - -
Car01g00458 826 SMART HOX_1 604 668 IPR001356 GO:0003677
Car01g00458 826 MobiDBLite consensus disorder prediction 729 753 - -
Car01g00458 826 SUPERFAMILY Homeodomain-like 606 670 IPR009057 -
Car01g00458 826 Pfam Associated with HOX 393 545 IPR006563 -
Car01g00458 826 ProSiteProfiles 'Homeobox' domain profile. 601 664 IPR001356 GO:0003677
Car01g00458 826 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 793 - -
Car01g00458 826 Pfam Homeobox KN domain 621 660 IPR008422 GO:0003677|GO:0006355
Car01g00458 826 CDD homeodomain 604 665 IPR001356 GO:0003677
Car01g00458 826 Gene3D - 607 669 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00458 Car13g00181 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00458 Car-Chr1:2663523 Car14g00087 Car-Chr14:459051 5.35E-78 dispersed
Car03g00349 Car-Chr3:4418841 Car01g00458 Car-Chr1:2663523 1.39E-44 dispersed
Car06g00239 Car-Chr6:1364836 Car01g00458 Car-Chr1:2663523 2.66E-70 dispersed
Car01g00458 Car-Chr1:2663523 Car13g00181 Car-Chr13:2110060 1.84E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2805 PF07526 POX 2.20E-42 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00458 - - cmax:111493386 1600.88