Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00485 ATGGAGTGCAGTGACGCAAAATCCGGTCCAACTTCAATCATCCTCCGGTCTCAGTCGCCGCCGCCGCCGCCTTGTGTTCAGGCCGGCGTCGTCGTCGTCACTCCGTGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTCCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTGTCTTCGGTGCTAGCAATATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGGGCTGATGCAGTGAGTAGTTTGGTGTATGAAGCAAGTGCAAGAATCAGAGATCCAGTCTACGGATGTGCAGGGGCCATTTGCCATCTCCAAAAACAGATAAACGAACTGCAAGCAGAGGTAGCCAAGACACATGCCGAGCTTGTCAACATGCAGTGCCACCAAGCCAATTTGGTGGCTCTAATTTGCAAGGAGCTAACTCAAACGCCGGCACCAACACCACCACCGCCTGACCACTGCTCACTTGACAACAATTTCAGCACTGCCACTCCTCAGAGCTACCCTTTGTTTGATGATACCAATATCTGGGAGGCTCTCTGGACATGA 588 52.38 MECSDAKSGPTSIILRSQSPPPPPCVQAGVVVVTPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAICHLQKQINELQAEVAKTHAELVNMQCHQANLVALICKELTQTPAPTPPPPDHCSLDNNFSTATPQSYPLFDDTNIWEALWT 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2847884 2849010 + Carg12308-RA Car01g00485 141349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00485 195 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Car01g00485 195 MobiDBLite consensus disorder prediction 1 23 - -
Car01g00485 195 Coils Coil 121 141 - -
Car01g00485 195 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00485 Car-Chr1:2847884 Car04g01337 Car-Chr4:7754472 3.23E-72 dispersed
Car01g00485 Car-Chr1:2847884 Car13g00164 Car-Chr13:1477601 1.64E-98 wgd
Car01g00485 Car-Chr1:2847884 Car02g00632 Car-Chr2:4759375 1.41E-72 wgd
Car01g00485 Car-Chr1:2847884 Car20g00407 Car-Chr20:2301707 9.02E-78 wgd
Car01g00485 Car-Chr1:2847884 Car20g00407 Car-Chr20:2301707 9.02E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2809 PF03195 LOB 7.60E-41 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00485 - - csv:101222262 292.737