Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00504 ATGGAAAACGATTGCACGGCTGTGGAGATCAATGGCCTTCCCACCTACGATGGAAGGTACATCCTCTACAACGTTCTCGGCAACTTATTTGAGGTCTCCGCCAAGTACTCCCCTTCAATTCAGCCTGTTGGACGCGGTGCTTACGCCATTGTTTGGTACTTCTTTTCCTCCTCTTTCGTTTTTCGCTTTGCTTCTAAGTTCTTCGATTTTATTTTGACGAAAGATGAGGTTGCGATAAAGAAGATAGGGAATGCTTTTGATAACTGGGTTGATACCAAGAGAACTCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGAAAATATTATAAAGATCAAAGATATAATTCCTCCACCAGAAAAGGAAAAATTCAATGATGTGTATATTGTGTATGTATTAATGGACACTGACCTGCATCAGATCATTTGCTCTAGCCAAGCTCTAACAGACGATCACTGTCAGCTCAGAAAATAG 477 40.88 MENDCTAVEINGLPTYDGRYILYNVLGNLFEVSAKYSPSIQPVGRGAYAIVWYFFSSSFVFRFASKFFDFILTKDEVAIKKIGNAFDNWVDTKRTLREIKLLCHMDHENIIKIKDIIPPPEKEKFNDVYIVYVLMDTDLHQIICSSQALTDDHCQLRK 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2963669 2965815 - Carg12327-RA Car01g00504 141368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00504 158 Pfam Protein kinase domain 73 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00504 158 ProSiteProfiles Protein kinase domain profile. 37 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00504 Car-Chr1:2963669 Car15g01126 Car-Chr15:8878926 3.52E-61 dispersed
Car01g00504 Car-Chr1:2963669 Car01g00507 Car-Chr1:2982016 3.62E-31 proximal
Car01g00504 Car-Chr1:2963669 Car13g00135 Car-Chr13:1214986 1.52E-69 wgd
Car01g00504 Car-Chr1:2963669 Car02g01197 Car-Chr2:8146811 3.33E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88585 PF00069 Pkinase 2.40E-08 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00504 K04371 - csv:101218403 212.231