Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00538 ATGGCGAAAATCCTAATTTCATCCTCCCCCTTCGTTGGTTCTTCTCTTCCTTCTCTCTCTCGCCATGGCCGTCTCCACACTCTTCCTCACCGGAGACACGTCGCCACCAGAGTCAATTTCAGCTTCCATGAACTTCCCCCCATCCATACCTTCGATTCCACCTTCAATTTTGACGCAATTGTTAGCAGGACCGAAGGCCTGCTCTACACACTTGCTGATGCAGCGGTTGCAGTGGATTCGACTGTTTCTGGTGGCGCCGCATCGAGTTCCGCTGATGCCGCGGTGCAGAAGAACGGTGGATGGTTTGGATTTATCTCCGATGCCATGGAAGTCGTTCTTAAAGTGTTGAAGGATGGACTTTCGGCTGTGCATGTGCCATATGCATATGGGTTTGCAATTATTTTACTTACTATTATCGTTAAGGTTGCAACTTTTCCTCTCACCAAGCAACAGGTTGAGTCAACATTGGCTATGCAAAATCTTCAACCAAAGATTAAAGCCATCCAACAAAGATACGCTGGCAATCAGGAAAGAATACAACTTGAGACATCGCGGCTTTATAGACAAGCTGGAGTTAATCCTTTAGCAGGCTGTTTCCCAACTTTGGCCACCATACCAGTCTGGATTGGACTATATCAAGCCCTTTCGAATGTGGCAAATGAGGGATTATTCACAGAAGGTTTCTTTTGGATTCCTTCTCTTGGTGGACCAACTACTATTGCTGCTCGACAAAGTGGAGCGGGAATCTCTTGGTTGTTTCCTTTTGTGGATGGCCATCCACCATTGGGCTGGTCTGACACTGCAGCGTACCTTGTATTACCTGTTCTCCTTGTCGTATCTCAGTATGTATCAATGGAAATCATGAAGCCTCCCCAGACTGATGATCCAACACAAAAGAACACACTCCTTATTTTCAAGTTTCTTCCCCTCATGATTGGTTACTTCTCCTTGTCTGTTCCATCAGGGTTATCAATTTACTGGTTCACCAACAATGTTCTCAGCACGGCTCAGCAAGTATGGTTACGCAAATTAGGAGGTGCAAAGCCTGTTGTAAATGAGGATGCTTCTGGAATCATAACAGCAGGACGTGCCAAACGAACGTCCGAATCAGAAAGAACGGGTGACAGATTTAAGCAGTTGAGGGAAGACGAGAAGAAGAATAAGTTAAGCAAGGCAGCTCGATCAGCAGAGATTCTGACTTTGGCTTCTGAGTCTGATAATGAGGATGAGTATGATGAGGAGACATCAGAGAAGGGTGAGGACAGTCTAGAAGAGGCATATGCGTCAGGTGCAGACAAAGACATCCCAACCTATAATCGACAGAAGAGAAGCAAACGATCAAAGAGGAAACGTGCAGTATGA 1362 45.96 MAKILISSSPFVGSSLPSLSRHGRLHTLPHRRHVATRVNFSFHELPPIHTFDSTFNFDAIVSRTEGLLYTLADAAVAVDSTVSGGAASSSADAAVQKNGGWFGFISDAMEVVLKVLKDGLSAVHVPYAYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTTIAARQSGAGISWLFPFVDGHPPLGWSDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDPTQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDASGIITAGRAKRTSESERTGDRFKQLREDEKKNKLSKAARSAEILTLASESDNEDEYDEETSEKGEDSLEEAYASGADKDIPTYNRQKRSKRSKRKRAV 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3181000 3187328 - Carg12361-RA Car01g00538 141402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00538 453 MobiDBLite consensus disorder prediction 382 453 - -
Car01g00538 453 MobiDBLite consensus disorder prediction 403 420 - -
Car01g00538 453 Pfam 60Kd inner membrane protein 129 343 IPR001708 GO:0016021|GO:0032977
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00538 Car-Chr1:3181000 Car05g00045 Car-Chr5:234837 5.58E-127 dispersed
Car01g00538 Car-Chr1:3181000 Car12g00041 Car-Chr12:189665 9.82E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00538 K03217 - csv:101217620 748.429