Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00540 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCTTCAGATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTGCCCTCTCATGTCGGTGCCACCGGGGTTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCCGAGACTGCCCTCAAATGTCCTCGATGTGATTCATCCAACACCAAGTTTTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGTGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCGAAATCTCCGGCGACCGGGAACGAAACGAGTAACAATAACAATTCAAACTCACCTACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGGACAGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAAGCTGGAGACATCGGTAACAGCGCCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGCGTTGTACCCATTTCAAATTAGCGAAGGCGGCAACAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGCTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATAATCAATTTTGGAACGGCGGAAATGGGTGGACAGATCTTTCTTGTGACTTCAATCATTGA 936 45.51 MDFSSVPLYLDPPPNWHQQSNHHHHLQIPNNGSPHHLQPSSTALPSHVGATGVGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQAGDIGNSALLNHHWRNSQSFPLSADLETPTALYPFQISEGGNNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNNQFWNGGNGWTDLSCDFNH 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3203824 3204978 - Carg12363-RA Car01g00540 141404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00540 311 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Car01g00540 311 MobiDBLite consensus disorder prediction 14 51 - -
Car01g00540 311 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Car01g00540 311 MobiDBLite consensus disorder prediction 121 162 - -
Car01g00540 311 MobiDBLite consensus disorder prediction 139 162 - -
Car01g00540 311 MobiDBLite consensus disorder prediction 14 48 - -
Car01g00540 311 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00540 - - - csv:101218334 451.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00540 Car02g00587 CCT
Car01g00540 Car02g00587 ECH
Car01g00540 Car13g00103 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00540 Car-Chr1:3203824 Car15g00373 Car-Chr15:1950676 9.27E-53 dispersed
Car01g00540 Car-Chr1:3203824 Car13g00103 Car-Chr13:742863 9.88E-102 wgd
Car01g00540 Car-Chr1:3203824 Car14g00128 Car-Chr14:617199 2.02E-58 wgd
Car01g00540 Car-Chr1:3203824 Car02g00587 Car-Chr2:4460372 1.81E-49 wgd
Car01g00540 Car-Chr1:3203824 Car20g00359 Car-Chr20:2020738 7.37E-53 wgd
Car01g00540 Car-Chr1:3203824 Car03g00379 Car-Chr3:4584565 6.27E-47 wgd
Car01g00540 Car-Chr1:3203824 Car04g01092 Car-Chr4:6300012 2.22E-59 wgd
Car01g00540 Car-Chr1:3203824 Car04g00201 Car-Chr4:1109912 1.44E-59 wgd
Car01g00540 Car-Chr1:3203824 Car06g00263 Car-Chr6:1493595 6.04E-54 wgd
Car01g00540 Car-Chr1:3203824 Car07g00965 Car-Chr7:5466298 2.02E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 5.4e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 2.8e-41 165.6
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.0e-40 161.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.0e-40 161.8
Car15g01176 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.3e-39 160.2
Car13g00488 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 5.3e-45 177.9
Car18g00388 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.2e-41 166.8
Car03g01185 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 4.8e-38 154.8
Car07g00157 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.4e-37 152.5
Car04g02541 . 1 142 C2C2-Dof Transcription Factor Family AT2G37590 67.4 9.9e-40 161.4
Car14g00128 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 1.9e-38 157.1
Car06g00263 CCT,CST,ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.1 2.7e-37 153.3
Car01g00540 CCT,CST,ECH 55 129 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.6e-37 152.5
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 58.9 7.8e-37 151.8
Car13g00103 CCT,CST,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 1.7e-36 150.6
Car15g01176 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 74.0 6.0e-40 162.2
Car06g00758 . 87 222 C2C2-Dof Transcription Factor Family AT5G39660 56.9 3.4e-38 156.8
Car01g00540 CCT,CST,ECH 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 9.1e-40 161.8
Car13g00103 CCT,CST,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 3.8e-38 156.4
Car15g00373 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.5e-37 154.5
Car03g00379 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.1e-36 150.6
Car03g00379 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.1e-37 152.5
Car11g00205 CCT,CST 26 315 C2C2-Dof Transcription Factor Family AT5G60850 51.3 1.4e-48 190.7
Car10g00264 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 9.2e-48 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2815 PF02701 zf-Dof 2.30E-32 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00540 Car_Chr01 FPKM 25.214922 29.354136 1.922767 1.211022 18.545826 18.775875 19.039347 0.0 0.0 0.0