Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00540 ATGGATTTCTCTTCTGTTCCACTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATCATCATCATCTTCAGATACCCAATAATGGATCTCCTCACCATCTGCAACCCTCATCCACTGCGCTGCCCTCTCATGTCGGTGCCACCGGGGTTGGCTCGATCCGCCGTGGTTCGATGGTCGACCGAGCTCGGCTAGCTAACATACCACTACCCGAGACTGCCCTCAAATGTCCTCGATGTGATTCATCCAACACCAAGTTTTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGTCGTCGATACTGGACTCGTGGTGGCGCTCTTCGAAACGTTCCGGTTGGAGGTGGTTGTCGTCGGAATAAAAAGAATAAAAGTAGACGCTCGAAATCTCCGGCGACCGGGAACGAAACGAGTAACAATAACAATTCAAACTCACCTACCAATACAATTCCCTTGCATAGTAGCAACGCTGAGAATATTATTGGTCAGTTACAGCCTCAAAATCCTCATCTTTCATTCATGGCTACGTTGAACAATTTCTCTCGTTATGGGACAGCCAATTTAGGGTTGAGTTTCAATGAGATCCAAACTCAAGCTGGAGACATCGGTAACAGCGCCCTTCTAAATCATCACTGGCGCAATTCCCAAAGCTTTCCTCTTTCAGCTGACCTAGAAACGCCGACAGCGTTGTACCCATTTCAAATTAGCGAAGGCGGCAACAACGCAACAAATTCAATTCTAAATCCAAATTCAAGAGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGCTGAAATCATCAAATTTGGGTGTCAACAATTCGGACAATAATAATCAATTTTGGAACGGCGGAAATGGGTGGACAGATCTTTCTTGTGACTTCAATCATTGA 936 45.51 MDFSSVPLYLDPPPNWHQQSNHHHHLQIPNNGSPHHLQPSSTALPSHVGATGVGSIRRGSMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHLSFMATLNNFSRYGTANLGLSFNEIQTQAGDIGNSALLNHHWRNSQSFPLSADLETPTALYPFQISEGGNNATNSILNPNSRATHLPPVKIEETQVLNLLKSSNLGVNNSDNNNQFWNGGNGWTDLSCDFNH 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3203824 3204978 - Carg12363-RA Car01g00540 141404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00540 311 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Car01g00540 311 MobiDBLite consensus disorder prediction 14 51 - -
Car01g00540 311 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Car01g00540 311 MobiDBLite consensus disorder prediction 121 162 - -
Car01g00540 311 MobiDBLite consensus disorder prediction 139 162 - -
Car01g00540 311 MobiDBLite consensus disorder prediction 14 48 - -
Car01g00540 311 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00540 Car02g00587 CCT
Car01g00540 Car02g00587 ECH
Car01g00540 Car13g00103 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00540 Car-Chr1:3203824 Car15g00373 Car-Chr15:1950676 9.27E-53 dispersed
Car01g00540 Car-Chr1:3203824 Car13g00103 Car-Chr13:742863 9.88E-102 wgd
Car01g00540 Car-Chr1:3203824 Car14g00128 Car-Chr14:617199 2.02E-58 wgd
Car01g00540 Car-Chr1:3203824 Car02g00587 Car-Chr2:4460372 1.81E-49 wgd
Car01g00540 Car-Chr1:3203824 Car20g00359 Car-Chr20:2020738 7.37E-53 wgd
Car01g00540 Car-Chr1:3203824 Car03g00379 Car-Chr3:4584565 6.27E-47 wgd
Car01g00540 Car-Chr1:3203824 Car04g01092 Car-Chr4:6300012 2.22E-59 wgd
Car01g00540 Car-Chr1:3203824 Car04g00201 Car-Chr4:1109912 1.44E-59 wgd
Car01g00540 Car-Chr1:3203824 Car06g00263 Car-Chr6:1493595 6.04E-54 wgd
Car01g00540 Car-Chr1:3203824 Car07g00965 Car-Chr7:5466298 2.02E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2815 PF02701 zf-Dof 2.30E-32 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00540 - - csv:101218334 451.44