Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00541 ATGGAGGAAGATAACGGCGCTCTGATTCAGAGCTTGATCGATGTTGTGAACGAGATTGCGTGGATCTCGGATTTTAGGCTTACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATACCAAAGAGCCAGTGTCTGAGGATACTCTCAAGGCTCTCGTATCGTTGAAAGAAGCCCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCCAGGGGAGCAAGATTTTTCTGGCCGTTGAGAGGGAGCAAATTATGGTCAAATTTCATGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGCACCTGACTCTGAGCTGATGGATGATATCCTTGCCCTTTACAACACAAGCAATGATTCTTCTGTGGATCAGAATCGCCTCAGGAGATTAGCTGAAAAATTACAATTAATTGGAATATCCGACCTTACACAAGAGTCCATAGCTTTGCATGAGATGGTTACTGCTAGTGGAGATGATCCAGGTGAGAGCATTGAGACGATGTCAGGGCTGCTGAAGAAAATAAAAGATTTTGTACAAACGGAGAACCTTGAAACGGATACTCCTGGCAGAGACAAGAGTCCTCCTGCTAGTTGTAGTGGACAAATTTCAAATGAGAAAAATAATACGGCCCCAATTATACCCGAAGATTTTCGCTGTCCCATATCCCTGGAGTTGATGAGAGATCCTGTTATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGTTTGAAGCAGGGCACGGAACATGTCCAAAGACACAACAGAATCTTTCAAGCACTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCACCAAAACGACCCAGCAGTGATCGACCATGTAGAAGCTCATCATCTTGCTCGGCTGCTGAACGCACGAAGATTGATATTCTGCTCTGCAAACTTGCATCTGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAGCGGAATGCGGATAATCGTGTTGCAATTGCTGAGGCTGGTGCAATACCTCTTCTTGTTGGCCTTCTTTCAACTCCAGATTCTCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTTTCCATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCTGTTCCTGGTATTGTGCTCGTGCTCAAGAAAGGGAGCATGGAAGCCCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAGAATAAAGTTAGAATTGGTGCCTCTGGAGCTATCCCGCCGCTTGTTACGCTGCTTAGCCAAGGCACTCAAAGAGGCAAGAAAGATGCCGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTGATGCAGCTTCTCACCGAACCTGGATCCGGAATGGTGGACGAAGCCTTAGCCATCTTGGCAATACTCTCTAGCCATCCCGAAGGGAAAGCAGTGATCGGATCTGCAAAGGCAGTGCCAGTTTTGGTAGATGTTATAGGGACAGGATCCCCCAGGAACAGAGAGAATGCAGCTGCTGTTCTCGTGCATCTCTGCTCTGGAGATGAACAACACCTATTAGAGGCCAGGGAGCTTGGAGTGATGAGTTCATTGATAGATTTGGCACAAAATGGCACGGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTCTTAGAGCACACGGAGGAGACTCGGGTGCAAGCACCAGAGTCTCGACCTCAAAACCAGCCATCCCTATCGAGCACTACGACGGAAGTCGCTGGTAGCTGA 1995 47.47 MEEDNGALIQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDTKEPVSEDTLKALVSLKEALESAKKLLRFGSQGSKIFLAVEREQIMVKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELMDDILALYNTSNDSSVDQNRLRRLAEKLQLIGISDLTQESIALHEMVTASGDDPGESIETMSGLLKKIKDFVQTENLETDTPGRDKSPPASCSGQISNEKNNTAPIIPEDFRCPISLELMRDPVIVSTGQTYERSCIEKWFEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSDRPCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSQGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGSGMVDEALAILAILSSHPEGKAVIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLLEARELGVMSSLIDLAQNGTDRGKRKAAQLLERMNRLLEHTEETRVQAPESRPQNQPSLSSTTTEVAGS 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3209827 3214271 - Carg12364-RA Car01g00541 141405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00541 664 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Car01g00541 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Car01g00541 664 MobiDBLite consensus disorder prediction 237 254 - -
Car01g00541 664 MobiDBLite consensus disorder prediction 643 664 - -
Car01g00541 664 Coils Coil 619 639 - -
Car01g00541 664 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Car01g00541 664 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Car01g00541 664 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Car01g00541 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Car01g00541 664 MobiDBLite consensus disorder prediction 636 664 - -
Car01g00541 664 MobiDBLite consensus disorder prediction 229 254 - -
Car01g00541 664 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00541 Car20g00358 CCT
Car01g00541 Car13g00102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00541 Car-Chr1:3209827 Car18g00828 Car-Chr18:9305016 0 dispersed
Car02g01419 Car-Chr2:9320048 Car01g00541 Car-Chr1:3209827 4.85E-91 dispersed
Car09g00689 Car-Chr9:4067046 Car01g00541 Car-Chr1:3209827 2.58E-06 dispersed
Car18g00655 Car-Chr18:7816975 Car01g00541 Car-Chr1:3209827 1.49E-48 dispersed
Car18g01002 Car-Chr18:10449766 Car01g00541 Car-Chr1:3209827 2.53E-18 dispersed
Car19g00142 Car-Chr19:1224494 Car01g00541 Car-Chr1:3209827 1.14E-90 dispersed
Car20g00844 Car-Chr20:5912330 Car01g00541 Car-Chr1:3209827 2.80E-26 dispersed
Car04g01263 Car-Chr4:7325666 Car01g00541 Car-Chr1:3209827 2.25E-17 transposed
Car20g00618 Car-Chr20:3457738 Car01g00541 Car-Chr1:3209827 2.43E-165 transposed
Car01g00541 Car-Chr1:3209827 Car13g00102 Car-Chr13:732289 0 wgd
Car01g00541 Car-Chr1:3209827 Car02g00586 Car-Chr2:4455461 2.01E-16 wgd
Car01g00541 Car-Chr1:3209827 Car20g00358 Car-Chr20:2013808 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00541 - - csv:101218572 1104.74