Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g00552 | TATTGCTTTCAGCCAAAAAAAAAAATGGCTACAGCGGCGATTCTCCTCTGTATTGCATCTCTTATCTCTACAATGTGGTCGGCTACTGCGAGAATCCCCGGCGTCTACTCCGGCGGTCCTTGGGAGAGTGCCCACGCTACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGCTACGGCGTGAACACGGCGGCGTTGAGCACAGCGCTATTCAATAATGGGCTGAGCTGTGGTGCCTGTTTCGAGATTAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCCTCGATTATGATTACGGCCACGAACTTCTGCCCGCCTAATTTTGCTCTGCCCAGTGACAATGGCGGTTGGTGTAACCCTCCTCGGCCACATTTCGATTTGGCGATGCCTATGTTCCTTAAAATCGCCGAGTACCGTGCTGGTATCGTCCCCGTCGCCTACCGCCGGGTGCCATGCCGGAAGCAAGGGGGGATACGTTACACAATCCACGGGTTCCAGTACTTCAACCTGGTTTTAATCACCAACGTTGCAGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACAGGCTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTAGTGGGCCAGGCCCTTTCATTTAGAGTCACAGGCAGTGACAGAAGGACTTCCACCACCTACAACGTGGCACCCCCTAATTGGCAGTTCGGCCAGACCTTCATCGGCAAGAATTTTAGGGTTTGA | 804 | 54.6 | YCFQPKKKMATAAILLCIASLISTMWSATARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIMITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKQGGIRYTIHGFQYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTTYNVAPPNWQFGQTFIGKNFRV | 267 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3258039 | 3259332 | - | Carg12375-RA | Car01g00552 | 141416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g00552 | 267 | Pfam | Lytic transglycolase | 76 | 163 | IPR009009 | - | |
| Car01g00552 | 267 | Pfam | Expansin C-terminal domain | 174 | 251 | IPR007117 | - | |
| Car01g00552 | 267 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 59 | 173 | IPR007112 | - | |
| Car01g00552 | 267 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 183 | 262 | IPR007117 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car01g00552 | Car02g00576 | CCT | |
| Car01g00552 | Car20g00342 | CCT | |
| Car01g00552 | Car02g00576 | ECH | |
| Car01g00552 | Car20g00342 | ECH | |
| Car01g00552 | Car13g00092 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car01g00552 | Car-Chr1:3258039 | Car04g02553 | Car-Chr4:20180730 | 5.31E-137 | dispersed | |
| Car04g02193 | Car-Chr4:17849293 | Car01g00552 | Car-Chr1:3258039 | 5.64E-85 | dispersed | |
| Car11g01427 | Car-Chr11:11641504 | Car01g00552 | Car-Chr1:3258039 | 1.78E-74 | dispersed | |
| Car15g00717 | Car-Chr15:3983455 | Car01g00552 | Car-Chr1:3258039 | 7.21E-94 | dispersed | |
| Car01g00552 | Car-Chr1:3258039 | Car13g00092 | Car-Chr13:680431 | 0 | wgd | |
| Car01g00552 | Car-Chr1:3258039 | Car02g00576 | Car-Chr2:4394601 | 7.16E-170 | wgd | |
| Car01g00552 | Car-Chr1:3258039 | Car20g00342 | Car-Chr20:1954549 | 3.73E-170 | wgd | |
| Car01g00552 | Car-Chr1:3258039 | Car03g00371 | Car-Chr3:4536607 | 2.18E-165 | wgd | |
| Car01g00552 | Car-Chr1:3258039 | Car04g01084 | Car-Chr4:6245571 | 3.88E-140 | wgd | |
| Car01g00552 | Car-Chr1:3258039 | Car04g00193 | Car-Chr4:1056885 | 5.89E-169 | wgd | |
| Car01g00552 | Car-Chr1:3258039 | Car07g00978 | Car-Chr7:5558020 | 1.49E-165 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g00552 | - | - | csv:101206662 | 515.383 |