Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00558 ATGGACAATCTCCTCGACGATTTCCCCAATTCATGGAATAATTTTCACTACAACCCTCATCTCTCAAATGGGTTCTTCAACGTCAACCGAGAAATCTTCGACCCTCTTCATCATAATTCGTCGTCGTCGACATCGCCGTCGCTGTCGCCGTCGAGCACGGAGGGTAACTCACCGGATTGTCACGACACCTCAAATACGATGCTGAAGTACATCACGGAGATGCTGATGGACGAAGAGGAAGATCTCAAAACTAAGCCCTGTATGCTTATTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTAAGAAGTATCCTCCTTCTCCAATCGGCCTTGGCGATTCTACTCAGAATTTTAGCTCTGATTTGGGTTTTTTTAAGGCTGAAGATGAATCTGAATCTTTTAATGGAGATTCCTCTGTTTTTCCCCCTTCTGATAAACCTCTTTTGAGTCAAGATTCCTTGTTTGGGATGCAATATATTTTCCATTTTAGGCAAGGAGCTGTGGAGGCTAGCAAATTTCTTCCTGTTAATGGTAAATTTGGAACCATTGACTTGGATAATGATTCATCTGCTTCTGTTCCTTCTAGGGCTGTTGATTTTTCTTGGCTTGCTGCTGTGGGTGATGCTAGATCCACCCTTCAAAATGGGTTGTTTAGAGAAAAGAAGAATCATCAAAGGGAAGACAGTGATGAGGAGTTGAGAAGTACTAAACAATCTGCTACTTTTGCTGATGATAGTTCATTGTCTGAGTTGTTTGATGAACTCTTGCTGTGTAGGGGTGAGAGCCGGCAGTCCCCATCATGGGGTTCGGACGATTCGTCCGAGAACGAATCGAGTAAGAAATCGAGAAAGAAAACGAAAGGTAAGAAGAATCGATCTAGGAAGCAAGAGAGTTGTGTGGAAGTTGTGGATTTATGGACATTGTTGATTCAATGTGCTCAAGCTGTTTCAAATTATGATCAGAGGACTGCTAATGAGCTGCTTAATCAAATCAGGCACCATTCTAATCCATCAGGGGATGGAAACCAAAGATTAGCTTATTTCTTTGCTAAAGGCCTCGAGACTCGGCTTGCGGCCGGGACGCCGCTGTATATGCCGTTTGCAAGCAATGAAACCTCTGCTGCTGATATCTTGAAAACTTATCAGATGTTCATCAAGGCATGCCCCTTTCGGCGGATGTCATATTTCTATGCCAATAGAACAATTCTGAAGCTAGCTGAGAATGTAACAAGGCTGCATATTGTTGATTTTGGTATATTATATGGTCTTCAATGGCCTTGCTTGATTCAGCGCCTCTCCGACAGACCTGGTGGACCTCCCAAGCTGAGAATCACAGGGATTGAGCTTCCTCAGCCAGGCTTCCGCCCCGCCGAACGTGTCGAGCAGACTGGACGTCGCCTTGCACATTACTGCAAAAGATTTAACGTGCCATTTGAACACAAGGTCTTGGCTCAGAAATGGGAGACTGTTAAGTACGAGGATCTTAATGTCGATAGAGACGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACCGTCGTTGCAAACAGTCCAAGAGACAAGGTTCTGAAGTTGATCAGGAAAATCAACCCAGATCTGTTCATTCATGAAGTCACCAATGGTTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGAGGCACTCTTTTACTACTCATCGTTATTCGACATGTACGAGGCAACCGTGCCTCGAGATAATCCACAGAGGTATCTATGCGAAAGGGAAATCTTAGGAAGAGATATCATGAACGTTATAGCGTGCGAAGGGCTCGAAAGAGTCGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACTAGGGCCGGGTTCAAACAAGTGCCATTAGACCAAGAACTGCTGAAGAATGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGCAGTGGATCAGGATGGAGCATGGATGTTACAAGGGTGGAAGGGACGGATCATCGACGGGTTGTCGTGTTGGGTAGTCGCGTAA 2052 44.59 MDNLLDDFPNSWNNFHYNPHLSNGFFNVNREIFDPLHHNSSSSTSPSLSPSSTEGNSPDCHDTSNTMLKYITEMLMDEEEDLKTKPCMLIDCLALQAAEKSFYDVLGKKYPPSPIGLGDSTQNFSSDLGFFKAEDESESFNGDSSVFPPSDKPLLSQDSLFGMQYIFHFRQGAVEASKFLPVNGKFGTIDLDNDSSASVPSRAVDFSWLAAVGDARSTLQNGLFREKKNHQREDSDEELRSTKQSATFADDSSLSELFDELLLCRGESRQSPSWGSDDSSENESSKKSRKKTKGKKNRSRKQESCVEVVDLWTLLIQCAQAVSNYDQRTANELLNQIRHHSNPSGDGNQRLAYFFAKGLETRLAAGTPLYMPFASNETSAADILKTYQMFIKACPFRRMSYFYANRTILKLAENVTRLHIVDFGILYGLQWPCLIQRLSDRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVKYEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDKVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRYLCEREILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKNVEKIVNTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCWVVA 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3292228 3294279 + Carg12381-RA Car01g00558 141422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00558 683 MobiDBLite consensus disorder prediction 37 63 - -
Car01g00558 683 Pfam GRAS domain family 313 680 IPR005202 -
Car01g00558 683 MobiDBLite consensus disorder prediction 268 299 - -
Car01g00558 683 MobiDBLite consensus disorder prediction 222 244 - -
Car01g00558 683 ProSiteProfiles GRAS family profile. 302 681 IPR005202 -
Car01g00558 683 MobiDBLite consensus disorder prediction 222 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00558 Car-Chr1:3292228 Car01g00889 Car-Chr1:8233682 2.69E-69 dispersed
Car01g00558 Car-Chr1:3292228 Car13g00086 Car-Chr13:634221 0 wgd
Car01g00558 Car-Chr1:3292228 Car14g00115 Car-Chr14:563954 3.78E-13 wgd
Car01g00558 Car-Chr1:3292228 Car02g00572 Car-Chr2:4374846 0 wgd
Car01g00558 Car-Chr1:3292228 Car20g00340 Car-Chr20:1938505 6.67E-176 wgd
Car01g00558 Car-Chr1:3292228 Car06g00255 Car-Chr6:1446580 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2816 PF03514 GRAS 2.70E-114 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00558 - - bhj:120083055 1122.46