Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00570 ATGGCGGAGATTTGCTGTAAAGTGATAGGTGAGGGTGAGGCGTCGTCGTCCTGTGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTTGCCGGAGTTGCTCCGTCGGAGACTGATACTGTTGCGAAGCGACAGAAGCTGGAGGATCGATCGGCGTCGCTTTCCAGAGACTGTGATAACGCAGTTGAGAACTGTGATTCCGGGGAAGAAGAGACTGTCGGGAGATTTGTGGCCGGAGAAGTTCCGAAGGAGGTGTCGACACCTCTGCATCGGGAATCTCCTATCATTCCTTTAGGCGGAGAGATTCCGAAGTTTGGATTCTCTTCTGTTTGTGGAAGACGGAGAGATATGGAAGACGCGGTGGCCGTTCATCCATCGCTTTGTTTTACAGACAAGGAAGCCACCGATAAGTTGCACTTGTTCGGTGTGTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGATCGACTGCACGAGCTCGTGAAAGAGGAGTTAGATCGGGAAGTAAAAGAAGAGGCTTCCGCCGCGGTGGAAGCTTCAAGGTGGGACGGCGCCATGAAGAGAATCTTCCGCAGAATGGACAACGAGGTTGTGGCGCGAAACAATGAAGAAATTGTGGTTGCGAATTGCAGATGCGAACTGCAGTCACCGGACTGTGATGCCGTTGGATCCACCGCCGTCGTTGCAGTTGTGACGGCGAATAAGATCATCGTTGCTAACTGCGGCGATTCGAGAGCCGTTCTCTGTCGCAACGGGAAGGCCGTTCCTCTCTCCTCCGATCACAAGCCGGATCGGCCCGACGAGCTAAACCGGATCGAGGAAGCCGGCGGCCGTGTGATCTATTGGGACGGACCAAGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAACTATCTGAAACCGTATGTGATATCGGAGCCGGAGGTGACGATAACAGATCGGACGGCAGAGGACGAGTGCCTAATTCTGGCGAGCGATGGACTTTGGGATGTGGTTCCAAACGAGACGGCGTGCGGAGTTGCGAGCATGTGTCTTCGGGGAAAGACAGAGGCTCGGTCGCCAGGGTCGCCGCCTGTGGCGGTGGAGACGGCGGTGGAAAGGGTGGGGACGGAGAGGGCGGACAAGGCCTGCAACGATGCGTCGATACTGCTGACGAAGCTGGCGTTAGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTAG 1269 55.87 MAEICCKVIGEGEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVAKRQKLEDRSASLSRDCDNAVENCDSGEEETVGRFVAGEVPKEVSTPLHRESPIIPLGGEIPKFGFSSVCGRRRDMEDAVAVHPSLCFTDKEATDKLHLFGVYDGHGCSHVAMRCKDRLHELVKEELDREVKEEASAAVEASRWDGAMKRIFRRMDNEVVARNNEEIVVANCRCELQSPDCDAVGSTAVVAVVTANKIIVANCGDSRAVLCRNGKAVPLSSDHKPDRPDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITDRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEARSPGSPPVAVETAVERVGTERADKACNDASILLTKLALARHSTDNVSVVVVDLKRDT 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3354591 3356835 - Carg12393-RA Car01g00570 141434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00570 422 Coils Coil 52 72 - -
Car01g00570 422 ProSitePatterns PPM-type phosphatase domain signature. 148 156 IPR000222 GO:0043169
Car01g00570 422 Pfam Protein phosphatase 2C 112 389 IPR001932 -
Car01g00570 422 ProSiteProfiles PPM-type phosphatase domain profile. 112 418 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00570 Car-Chr1:3354591 Car15g00113 Car-Chr15:657134 7.83E-121 dispersed
Car14g01106 Car-Chr14:9805623 Car01g00570 Car-Chr1:3354591 1.16E-73 dispersed
Car17g00711 Car-Chr17:6506066 Car01g00570 Car-Chr1:3354591 5.24E-19 dispersed
Car01g00570 Car-Chr1:3354591 Car16g00143 Car-Chr16:821371 6.17E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00570 K14497 - csv:101206871 664.84