Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00604 ATGGCAGTTGGAGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTGATATTAGCAATGTTAGCATTACACCAAAACAAAATCCACATCTTGAAATTCTCCCTTTTGGGTTCCATTCTTTCCAATTTACTTCTAGTTCTTGGCACCTCTCTTCTCTTTGGAGGCTTATCCAATCTCAACAAGCAACAAACATTCAACCCAGTAAGCCAAAACAAAAAATACTTTCTAACTTTCGAATCGAACACGTTCGAGAAACAAGAAACAAGAACATTAACGTTATCGATCATGTTTTCTCAACAGAAAGTCGCGAATGTAAGCTCTTTAGTGTTGCTACTCGGATTGCTATGCCAAATGCTGCCATTGATATCAAGATTTGCATCACCATCAGCTAAATTATGGACAGACATGTCTGTTCTAGAGCTATCAAGAACATGCAGCATCATAATGCTCATAGCTTATCTTGCTTGTGTGTTCTTCCAATTGAAAACCCATAACCAATTTTTTGGTCTACCAGAGGAGGAGGAGGATGATGAAGAAATGGCAATAATTGGGGTTTGGAGCTCGTTTGGTTGGCTGGTGGGTATGACCATTGTCATAGCTGTTCTATCACAGTATGTTGTGGCTACAATTGAGGAGGCATCACAATCATGGGGCGTTTCGGTGAGCTTTATGAGTATAATTGTGCTGCCGATTATGGGTAATGCAGCTGAGCATGCTGGGTCGGTTATATTTGCTGTGAAGAACAAATTGGATATAACACTTGGGATAGCATTGGGATCAGCAGCTCAAATTTCAGTGTTTGTGGTGCCTTTGAGTGTAGCTGTTGGATGGTGTTCGGGCATCAAAATGGATCTTGATTTCGGTCTCATCGAAACCGCATCTCTCGCCTTCGCCATCGTCCTCACTCTATTCACTCTACAGGACGGAAATTCACATTACATCAAAGGAATGGTACTTCTCTTCAGCTATGTAGCAATTTCTTTCTGCTTTTTCTGTTCAAACTATTGA 1011 41.15 MAVGGLVNATCGNATELILAMLALHQNKIHILKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNPVSQNKKYFLTFESNTFEKQETRTLTLSIMFSQQKVANVSSLVLLLGLLCQMLPLISRFASPSAKLWTDMSVLELSRTCSIIMLIAYLACVFFQLKTHNQFFGLPEEEEDDEEMAIIGVWSSFGWLVGMTIVIAVLSQYVVATIEEASQSWGVSVSFMSIIVLPIMGNAAEHAGSVIFAVKNKLDITLGIALGSAAQISVFVVPLSVAVGWCSGIKMDLDFGLIETASLAFAIVLTLFTLQDGNSHYIKGMVLLFSYVAISFCFFCSNY 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3537468 3539875 - Carg12427-RA Car01g00604 141468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00604 336 Pfam Sodium/calcium exchanger protein 3 162 IPR004837 GO:0016021|GO:0055085
Car01g00604 336 Pfam Sodium/calcium exchanger protein 189 327 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00604 Car-Chr1:3537468 Car07g01042 Car-Chr7:6032943 3.16E-109 dispersed
Car01g00604 Car-Chr1:3537468 Car06g00205 Car-Chr6:1201779 2.09E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00604 K07300 - csv:105436053 410.223