Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00617 AAAACACGACACGCGCGAGCCGTTCCCCCTTTATATTCCCCTGTTTTTTTCTTCCCATTTTTCCCATATCCAAATCCTTCAAATTTCATCTCAATTTCAAGAACAGAAACAAAATTCACATCTGGGTCTTCGATTTTTCGTGTTTTTGAATCTGGGTTTTCTCTAGAAGATCGGAATATGTCCGTCTCCGTCGCCGTTTCGAATTCACCGGGGTTTTCCCCTTCGTCCTCGATGTTCTGCAACAAGGCGGCGATCATTTCTCCGGCGCCGGAAGCTCTAACACTGACGTTGGCTCATTTGAAGTCGTCTCAGCCTTCGTCGTCTTGCTCGTCTTCGCCGTCTTCCCCTTCTTCCCCTTTTTGGATTAGGTTTCCAAAGCCCCCTTCTGGGCTTTCCGCCGTGGCGCCTATGGCCTCCACTTCTTCTACTTCGTCTCCAACGTCGTCCAACTCGATCACGAAGAGGAAGAGACCAGCGAGGTTGGATATTCCGTTGACGCCGTTGAGCTTTGGAGCTCTGGCGTCGCCGTCGTCGTCGTTCTGGGACGTGATGGAGGCCGAGAGAGATGGGTATTCTGTTTATTGCAAGAGAGGGAGGCGGAGAATCTCCATGGAAGATCGGTATTCAGCCGCTGTTGATCTTCGTGGCGATTCTAAAGAGGCATTTTTTGGTGTATTTGATGGACATGGCGGTTCAAAGGCGGCAGAATTTGCAGCAAATAACTTAAAGAAGAACATAATGAACGAACTTGAAAGAATAACTGACTATGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAAGATCAACGCGGTGGGTCATGTTGTGTAACAGCCCTGATCAAGAAAGGCAACCTTATTATCTCCAACGCCGGTGACTGCCGTGCCGTTCTTAGCAGCAAGGGCGTCGCAGAAGCCATAACCTCCGACCACCGCCCGTCTCGAGAAGACGAAAGACAGCGAATCGAGTCGAGGGGTGGATATGTTGATCTCTGCAATGGCGTTTGGAGAGTCCAAGGATCTCTAGCTGTAACAAGAGGAATTGGAGATGCTCACTTGAAACAATGGGTGATAGCAGAGCCAGAGACAACGTCGATACGGATCGAAGCTCGACACGAGTTCTTGATCTTAGCCTCCGACGGGTTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATCGTGCGCCCATTATGCGTGGGGATTGAGAAGGCAACGCCATTGGAGGCCTGTAAAAAGCTCGTGGAGCTATCACTTTCAAGAGGATCAGTGGATGATATTAGTGTAGTTCTTATTCAATTGCCTAACTTTATTTGA 1335 48.84 KTRHARAVPPLYSPVFFFPFFPYPNPSNFISISRTETKFTSGSSIFRVFESGFSLEDRNMSVSVAVSNSPGFSPSSSMFCNKAAIISPAPEALTLTLAHLKSSQPSSSCSSSPSSPSSPFWIRFPKPPSGLSAVAPMASTSSTSSPTSSNSITKRKRPARLDIPLTPLSFGALASPSSSFWDVMEAERDGYSVYCKRGRRRISMEDRYSAAVDLRGDSKEAFFGVFDGHGGSKAAEFAANNLKKNIMNELERITDYEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLIISNAGDCRAVLSSKGVAEAITSDHRPSREDERQRIESRGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETTSIRIEARHEFLILASDGLWETVSNQEAVDIVRPLCVGIEKATPLEACKKLVELSLSRGSVDDISVVLIQLPNFI 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3616119 3618268 + Carg07062-RA Car01g00617 141481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00617 444 Coils Coil 239 259 - -
Car01g00617 444 Pfam Protein phosphatase 2C 196 433 IPR001932 -
Car01g00617 444 MobiDBLite consensus disorder prediction 134 154 - -
Car01g00617 444 MobiDBLite consensus disorder prediction 132 158 - -
Car01g00617 444 ProSitePatterns PPM-type phosphatase domain signature. 222 230 IPR000222 GO:0043169
Car01g00617 444 ProSiteProfiles PPM-type phosphatase domain profile. 190 440 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00617 Car13g00028 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00617 Car-Chr1:3616119 Car04g00139 Car-Chr4:749146 9.22E-121 dispersed
Car01g00617 Car-Chr1:3616119 Car13g00028 Car-Chr13:259015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00617 K17506 - csv:101207841 611.683