Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00618 ATGGCGGATACGACGAAGCTTTCCTGGACCAGAAGTAATTGTGTCGTCGGAAAGGGCTCCTTTGGAACTGTGACTGTCGGGATTCGGAATTCGGACGGTCGGGTTTTTGCGGTGAAGTCTGTCGAACAGAGTGTTGGATTCCGGCGGCAGATTGAGTGTTTAGAGAATGAAATTCGGATTCTTAGATCGTTGAATTCGCCGTACGTGGTGGGGTTTCTTGGTGATGATGTTTCCGATGAGACGCCGACGACGTCGCTTCGGAATTTGCACATGGAGTATATGCCAGGTGGCACTGTTGCCGATGATCCAATCGGTACCGGCGATGAGATGGTTCTACGGGCGAGGACACGGTGTATTGTTTCGGCTTTGAGTTTTGTTCATTCCAAAGGAATCGTTCACTGTGATGTTAAAGGGCGGAATGTTTTGATTGGATTGAATCCAAGTTTTGTTAAATTGGCCGACTTCGGCTCTGCAATTGAAATCGGCGACGGCGACGACGACGACGGCGACACGTGTCGATGTTCGGTGGCGCCGCGAGGGAGTCCGCTGTGGATGGCGCCGGAAGTGGTTCGAGGGGAATATCAGGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACAGTCATTGAAATGGTCACCGGAAAACCGGCATGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGGTTTTCCGATGACTTGCCGGAGTTTCCGACACGGTTGTCGGGACTCGGACGGGATTTTCTCCGGAAGTGTCTTGTAAGAGATCCGAAAGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTTTAGCGACGGTGGCAGCCTCGCCGCAAATCGCCATCGAGAATTCCCCCCGGTGCGTGCTCAACTGGGTCAACGCCGATTTCGACGATAACGAAGATGAAGAAATCCCCTTCTCCGGCGAAACCTCCAGCGCCGGTAACCGAGAAAGCGAGATCTCCGGCAAGTGCAGAATAGGGAAATTGAGTACGAGTGAATGGCCGAACTGGGAATCGGACGGTTGGTCGTCGGCGAGAAGGTTCACAGCGACGCCGGTAGCTTGTGAAGAAGAAGGAGTAGGGGTAAATTGGGAATATGGGAATTCGAGAGGGGTAGAAATGGAAATGGAGGGAACAAGTTCAGAATATTCGGAGTTTGTAAAGCACAGTAACGAAGAATTGGGAGCCGCCCTTTCAAATCCTGGCGGTCTGGAGACTCCGGAGCGGCCACGTAATAATTGCGGCAGTGGCAGCGGCGGTGACGGTGGCGGTGGCGGTGGATTAAACTCACAGCGGAAGATCATGTATGGACAAACACTATCATACTAA 1338 52.91 MADTTKLSWTRSNCVVGKGSFGTVTVGIRNSDGRVFAVKSVEQSVGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSDETPTTSLRNLHMEYMPGGTVADDPIGTGDEMVLRARTRCIVSALSFVHSKGIVHCDVKGRNVLIGLNPSFVKLADFGSAIEIGDGDDDDGDTCRCSVAPRGSPLWMAPEVVRGEYQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSGLGRDFLRKCLVRDPKERWSCDRLLQHPFLATVAASPQIAIENSPRCVLNWVNADFDDNEDEEIPFSGETSSAGNRESEISGKCRIGKLSTSEWPNWESDGWSSARRFTATPVACEEEGVGVNWEYGNSRGVEMEMEGTSSEYSEFVKHSNEELGAALSNPGGLETPERPRNNCGSGSGGDGGGGGGLNSQRKIMYGQTLSY 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3627290 3629439 + Carg07061-RA Car01g00618 141482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00618 445 Pfam Protein kinase domain 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00618 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Car01g00618 445 MobiDBLite consensus disorder prediction 399 445 - -
Car01g00618 445 ProSiteProfiles Protein kinase domain profile. 10 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00618 445 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00618 Car-Chr1:3627290 Car20g00544 Car-Chr20:2991302 2.13E-65 dispersed
Car01g00618 Car-Chr1:3627290 Car19g00708 Car-Chr19:8148277 1.14E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88588 PF00069 Pkinase 1.90E-49 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00618 - - cmo:103497226 620.928