Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00642 ATGGTTGACAACGGCGAGGAGAAATTGCTGGCTATGGCTCGCCACATAGCCAAGACTATGGGCCGCAACGAGTCCATGGCCGATGATATTCTCCAGATTTTTTCCAATTTCGATGCTAGGTTTTCCCTTGACAAGCTCTCTGATAAATCCGATGAGGTTGATCCCAGAAGCTCTGTCGCTTTGCAGCGCTCTCTCAAGTCTTTGGACCGCCGGATCTCCCAATATTTGGCTGCTGACCACCCGATTTGGGCGGATTCAGCCGATTCCGCTGCTTTTCTTGACGCTATTGATGAGTTGATTGCTACGATTAGGGACTGGACGCCGATGGCTAGGGATAAGTCTGTTGGTACCTACCTTGCTCGCGCCGACGATCTGATGCAGCAGGCGATGTTTCGTGTAAGTGAAGAGTTTCGGTCGTTGATGGAGCGTGGAGGTGAGTCTTTTGAACTTACTCGGCATTTCAGGAACCGTGAGTCAACGGGCGAGTTTTTCTTCGATTCTGAGGAAGATGAGGAAGGTGCGGAAGGAATTCTTGGTGACGGCCTCCAGATCCCGGTGGCGCAGCCGGTGACAGACTACAACGTTGTAATCGATGCGCTTCCGTCGGGGACTATCAGCGATCTCCATGAGATAGCGAAGCGTATGGTGGCGGCTGGGTACGAGAAGGAGTGTTCGCACGCTTTCAGTAGCTGCAGGAGGGAGTTCTTAGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTTAGCATCGATGAAGTTCAGAAGATGCAATGGCAAGACATGGAAGAGGAGATTGAGCGCTGGATGAAAGCGATTACCGTCTCCCTTCGAATCCTCTTCCCAAGCGAACGACGGCTCTGCGAACGAGTCTTCGTCGGCCTCTCCTCCGCCGCTGATCTCTCTTTCATGGAGGTCTGCCGAGGATCAACAATTCAGTTACTGAATTTTGCAGATGCGGTCGCAATCGGCTCGCGAGCGCCGGAACGGCTGTTCAAAATCCTCGACATGTTCGAGACCTTGAGAGACTTGATGCTGGATTTCGATTCAGTATTTTCGGATCAGTACTGCTTGTTACTTAGAAACGAAGCAATCGCAATCTGGAAAAGGTTAGGCGGAACAATCAAGGGGATCTTCATGGAGCTCGAGAATTTGATCCGTCGTGATCCGGCTAAAACTCCAGTTCCGGGGGGCGGCCTTCATCCAATTACTCGGTATGTGATGAATTACCTTAAAGCAGCCTGTAAATCACGGCAGACTTTGGAGCAAATTTTCGAAGAAGCCGCTCTTCCTTCGAAGGATTACACCAAACTCGATGACAGAGCAACAGCATCGTCTTCATTATCAGTTCAAATGGACTGGATTATGGAGCTTTTAGAGAGCAATTTAGAGGCAAAATCAAAGATATACAACGATCTATCCTTAAGCTCTGTGTTTCTGATGAACAATGGGCGATACATTGTTCAGAAAGTGAAAGACAGCGAATTAGGATCGGTTTTAGGGGACGATTGGATTCGAAAGCACTCGGTTAAGAACAGGCAATACCTCGGAAATTTCCTCAAAAGTTCATGGAGCAAGGTGGTCGGAGTATTGAAAATTGACAGTGGCTCCATAGCTCCAGCTGTAATGAAAGAGAAGCTGAAATCATTCAACATACAGTTCGAAGAACTCTGCCAAACCCAATCTACATGGGTGATATCCGAGAATCAGCTTAGAGAAGAAGCAAAAATCTCAGTTACCAAAATCCTAATGCCTGCATATCAAAACTTCATCGAAAGGTACCAGAGTTTGCCGGAGTTGTCGAAGCGTACAGACCGGCATTTGATGTACACGGCGAAGGATGTGGAGGCTCAGATCACCCAGCTGTTCCAAGGAGGCGGCGGAAGGAGGTAA 1890 48.73 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKSDEVDPRSSVALQRSLKSLDRRISQYLAADHPIWADSADSAAFLDAIDELIATIRDWTPMARDKSVGTYLARADDLMQQAMFRVSEEFRSLMERGGESFELTRHFRNRESTGEFFFDSEEDEEGAEGILGDGLQIPVAQPVTDYNVVIDALPSGTISDLHEIAKRMVAAGYEKECSHAFSSCRREFLEESLSRLGLQKLSIDEVQKMQWQDMEEEIERWMKAITVSLRILFPSERRLCERVFVGLSSAADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMLDFDSVFSDQYCLLLRNEAIAIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLKAACKSRQTLEQIFEEAALPSKDYTKLDDRATASSSLSVQMDWIMELLESNLEAKSKIYNDLSLSSVFLMNNGRYIVQKVKDSELGSVLGDDWIRKHSVKNRQYLGNFLKSSWSKVVGVLKIDSGSIAPAVMKEKLKSFNIQFEELCQTQSTWVISENQLREEAKISVTKILMPAYQNFIERYQSLPELSKRTDRHLMYTAKDVEAQITQLFQGGGGRR 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3785199 3787604 + Carg07035-RA Car01g00642 141506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00642 629 PANTHER EXOCYST COMPLEX COMPONENT EXO70B1 29 623 - -
Car01g00642 629 Pfam Exo70 exocyst complex subunit 266 619 IPR046364 GO:0000145|GO:0005546|GO:0006887
Car01g00642 629 SUPERFAMILY Cullin repeat-like 83 622 IPR016159 -
Car01g00642 629 Gene3D Exocyst complex component Exo70 82 628 - -
Car01g00642 629 PANTHER EXOCYST COMPLEX PROTEIN EXO70 29 623 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00642 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204511 1077.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00642 Car13g00010 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00642 Car-Chr1:3785199 Car13g00651 Car-Chr13:8066683 2.70E-124 dispersed
Car01g00642 Car-Chr1:3785199 Car13g00010 Car-Chr13:108030 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g709 . . Bda02g00882 . Bpe01g00069 . . . Cmo13g00020 . Cma01g00707 Cma13g00032 Car01g00642 Car13g00010 Sed13g1351 . Cpe20g00898 Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 . . . . . . . Cone1ag0768 Cone5ag1050 . . . . . . . Blo14g00063 . . . . . . . . . . . . . . Cpe02g01140 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00872 CST 10 653 EXO70 exocyst subunit family AT5G03540 76.6 5.9e-286 980.3
Car04g01504 CST 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Car07g00813 CST 1 639 EXO70 exocyst subunit family AT5G03540 68.3 4.6e-254 874.4
Car03g01010 CST 1 616 EXO70 exocyst subunit family AT5G03540 67.5 7.6e-241 830.5
Car07g00813 CST 1 639 EXO70 exocyst subunit family AT5G52340 75.3 1.3e-282 969.1
Car18g00872 CST 12 653 EXO70 exocyst subunit family AT5G52340 73.8 2.5e-270 928.3
Car04g01504 CST 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.7e-269 925.6
Car03g01010 CST 1 597 EXO70 exocyst subunit family AT5G52340 76.0 1.2e-264 909.4
Car07g00813 CST 145 632 EXO70 exocyst subunit family AT5G52350 61.3 1.2e-168 590.5
Car04g01504 CST 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.2e-166 582.0
Car18g00872 CST 147 653 EXO70 exocyst subunit family AT5G52350 58.9 2.7e-165 579.3
Car03g01010 CST 145 597 EXO70 exocyst subunit family AT5G52350 60.9 1.4e-153 540.4
Car01g00642 CST 1 624 EXO70 exocyst subunit family AT5G58430 65.4 4.6e-240 827.8
Car13g00010 CST 1 626 EXO70 exocyst subunit family AT5G58430 64.9 4.6e-240 827.8
Car13g00010 CST 1 625 EXO70 exocyst subunit family AT1G07000 51.7 3.6e-173 605.5
Car01g00642 CST 1 623 EXO70 exocyst subunit family AT1G07000 51.3 2.3e-172 602.8
Car06g01419 . 58 671 EXO70 exocyst subunit family AT5G13150 51.8 7.6e-169 591.3
Car14g01275 . 61 675 EXO70 exocyst subunit family AT5G13150 50.3 7.1e-167 584.7
Car04g02200 . 79 675 EXO70 exocyst subunit family AT5G13990 54.6 7.3e-186 647.9
Car15g00706 . 87 693 EXO70 exocyst subunit family AT5G13990 53.0 1.2e-183 640.6
Car14g01052 CST 12 611 EXO70 exocyst subunit family AT1G72470 64.1 1.7e-213 739.6
Car01g00006 CST 12 596 EXO70 exocyst subunit family AT1G72470 62.2 1.6e-200 696.4
Car14g01052 CST 12 609 EXO70 exocyst subunit family AT1G54090 62.1 2.7e-208 722.2
Car01g00006 CST 9 594 EXO70 exocyst subunit family AT1G54090 59.7 1.9e-193 672.9
Car14g01052 CST 9 610 EXO70 exocyst subunit family AT3G14090 63.4 2.5e-217 752.3
Car01g00006 CST 9 594 EXO70 exocyst subunit family AT3G14090 61.3 2.9e-202 702.2
Car11g00032 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 63.1 4.5e-228 788.1
Car10g00053 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 62.2 3.8e-227 785.0
Car13g00651 CCT,CST 19 657 EXO70 exocyst subunit family AT5G50380 62.1 8.4e-227 783.9
Car18g00228 CCT,CST 22 661 EXO70 exocyst subunit family AT5G50380 62.8 8.4e-227 783.9
Car12g00281 . 17 684 EXO70 exocyst subunit family AT4G31540 73.4 4.0e-293 1004.2
Car05g00564 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 3.4e-292 1001.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00642 Car_Chr01 FPKM 13.752096 14.108522 15.853664 15.732642 17.75992 16.171106 17.122263 23.148752 22.388821 22.982882