Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00644 ATGGCCTCCTCTTCCGGGAGCTTGGATACCTCTGCAAATTCCCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACCTCTTACTCCGACCTTCTCGCCGCCGGCAGCAACGATTTTCCATCCTCCGCCGCCGCCCATGGAGCTCACCGAGGCTCTGGAACTGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTGCCTCTGTCGCCACCTACTCTGTTTCCTTCTCCCCTGTTCTCCATTCCTCCTGGTTTGAGCCCCACCGAGCTTCTTGATTCGCCGGTTCTCCTCAGTGCTTCTTATGTTCTTCCGTCGCCGACCACCGGGAGTTTCCCGTCGCAGTCGTTGAATTGGAAGAACAATTCTGGGTATAATCAACAGAGCATCAAAGAAGAGAACAAATTCTTGTCGGAATTCTCATTTCTAAATCAATCGTCTCAGCCGCCGCCGACATCTTTTCAGCCAGCTCCGACGACTGAGGGAAAGAAACAGGACGGATCGATGCAGAGCTTCTCACCGGAATATGGGATTGTTCAAAACCAGAGCCAGAACAACGCCGGCAGGGATTACCCTCAACAATCTCAGACGGTGAATCGGAGATCCGACGACGGTTACAACTGGAGAAAATACGGCCAAAAACAGGTCAAGGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGAAGCCATAACCACCCGAAGCCACAGTCAACGAGGAAGTCATCGTTGTCGTCCGCCGTGTCGGCGTCAAATCCAGCCGCCAGCGATATGGCGGAGCAGTCATTCACAACCCAAGGAAGCGGTCAATTCGACGGCGTTGCAACGCCGGAGAATTCATTGATCTCGGTCGGCGACGATGAATTCGATCGGAGCTCTCAGAGGAGCAAATCTGCCGGAGACGATAACGACGAGGACGAACCAGAGGCCAAGAGGTGGAGAAGGGATGGTGATAACAGTGAAGGGATTTCAGCTGCAGGTAACCGGACTGTGAGAGAGCCGAGAGTCGTTGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGTTACCGGTGGAGGAAGTACGGCCAAAAAGTGGTTAAGGGAAACCCAAATCCAAGGAGTTATTACAAATGCACAAATCCGGGATGTCCAGTAAGAAAGCATGTAGAGAGAGCCTCGCATGATCTAAGAGCGGTGATCACAACCTACGAAGGCAAACACAACCACGAAGTCCCACCGGCACGCGGCAGCGGAAGCCATTCCCTCAGCCGTCCATTTCCCAGCAATGACCCGTCGGCCACCGCAATTCGCCCATTGGCGGTGACCCATCAAGCAAACAACGGCGCTGACGACAACGACAACCTTCTTCATGGTCTGAGGCAAACACCATTCGCAATGGAAATGGTGCAAAATTCTAATGGATTTTCATTCCCAGAATTTGGGAACTCCATGGGGATGGGATCCTACATGAATCCAACACAATCCAATGACAGTTTGTTCGTTAGAGCAAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTGA 1626 51.23 MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLAAGSNDFPSSAAAHGAHRGSGTGVPKFKSLPPPSLPLSPPTLFPSPLFSIPPGLSPTELLDSPVLLSASYVLPSPTTGSFPSQSLNWKNNSGYNQQSIKEENKFLSEFSFLNQSSQPPPTSFQPAPTTEGKKQDGSMQSFSPEYGIVQNQSQNNAGRDYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRKSSLSSAVSASNPAASDMAEQSFTTQGSGQFDGVATPENSLISVGDDEFDRSSQRSKSAGDDNDEDEPEAKRWRRDGDNSEGISAAGNRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHEVPPARGSGSHSLSRPFPSNDPSATAIRPLAVTHQANNGADDNDNLLHGLRQTPFAMEMVQNSNGFSFPEFGNSMGMGSYMNPTQSNDSLFVRAKEEPRDHDMFIQSLLC 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3796468 3798526 - Carg07033-RA Car01g00644 141508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00644 541 MobiDBLite consensus disorder prediction 41 70 - -
Car01g00644 541 Pfam WRKY DNA -binding domain 205 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00644 541 Pfam WRKY DNA -binding domain 375 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00644 541 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g00644 541 MobiDBLite consensus disorder prediction 159 204 - -
Car01g00644 541 MobiDBLite consensus disorder prediction 251 358 - -
Car01g00644 541 MobiDBLite consensus disorder prediction 145 226 - -
Car01g00644 541 MobiDBLite consensus disorder prediction 311 346 - -
Car01g00644 541 MobiDBLite consensus disorder prediction 259 304 - -
Car01g00644 541 MobiDBLite consensus disorder prediction 425 456 - -
Car01g00644 541 ProSiteProfiles WRKY domain profile. 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00644 Car-Chr1:3796468 Car10g00752 Car-Chr10:3971361 5.84E-16 dispersed
Car18g01035 Car-Chr18:10686288 Car01g00644 Car-Chr1:3796468 5.14E-80 dispersed
Car10g00923 Car-Chr10:6999038 Car01g00644 Car-Chr1:3796468 2.87E-116 transposed
Car01g00644 Car-Chr1:3796468 Car13g00008 Car-Chr13:93482 4.33E-17 wgd
Car01g00644 Car-Chr1:3796468 Car14g00022 Car-Chr14:149155 2.69E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2821 PF03106 WRKY 3.20E-25 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00644 K13424 - csv:101207158 807.749