Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car01g00665	ATGGCATCTAGTCGCTGCATGAATACTTCTTGCGGAGCCGCCACGCCGCATGATTGGACCAAAGGATGGCCTCTGGGATCCGCTGGATTCGCGCATCTATGTCTCAACTGCGGATCTGCTTATGAAAATCTAGTCTTCTGTGATACGTATCACTCGGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATCCATTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATATCTGGATTATGGAGGTATTGGGTGTACTACCTGTGTGAAAAGATCTCGACTTGATGTGATCCGAAGAGATGAAATTTCTAATGGATTTGATGCAGCGACGGTTGGAAATGTTGGCCTTCTGCGACCTGCTTCTGTTGAGGATCGAGTGGTCCGAAATGGCATTAAAGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCTAATGAAACCGACCATTTTCAGCAAGCCCAAAGAGTTGACAGAAGTGCATCTCCAGCGCAAAACAAAGGAGAAAATCTCAGGAGCCCATTTGGGGAAGTTGGAACAAGCTTCTTTAATATGACTAAACTACCTGTTAAATGCCAGCCATCGGTTGGTTCGGTAGCATACTCCCAACTAGATACTAGACTAAAAGATATGCAGGAATCTCTTAGTCAGCCATCGTTAAATATAACTTTGGGGGTTCCATTAGGTACACCAAACTTTGTGGTACCCTTATCAGGAAGTGCAGCTGAAGAGGATGAAAAGAGCATTCTTCCATTTCAACAGGGCCAAAGATCCCGTCCAATTTTTCCTAAGCCCTTAAAAACTGGGACCACAGTTAATTCAGAAACAAGAAAGGGAATGACTCCTCTGGTGCGTATTGCTCGACCACCTGCTGAAGGTCGGGGTAAGAACCAACTTCTTCCGAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAAATATCTGGAGATTTGAATTCTACTATTGTTCCTCTATTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTTCCCCCTATCTCTCAATCAGAGGGTCTCCCTGTCAGGATTCAAGATGTGAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCAAACAACAACAGCAGAATGTATGTTTTGGAGGGCGTTACCCCTTGCATACAGTCCATGCAATTACAAGCTGGTGATACTGTTACCTTTAGTCGGATAGATCCTGGAGGCCAATTAGTCATGGGATTTCGAAAGGCAACAAATTCTTCTGATACACAGGATGCCAAGATCTCTACACTTCCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGGAGATATTAGTTTGCATAAAATCGAAAATTTTGGGGGTAGGATGACTTCAGGACAACAACCGATGTCAACCATGGACAAGAAGGGGACTCGAAACATTGGGTCTAAAAATAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACATGGGAAGAAGCTCAAGATCTACTCCGGCCTCCACCAAGTGCAAATCCCACCATTGTCACAATCGATGACCATGAATTTGAGGAGTATGATGAACCTCCAGTTTTTGGCAAGAGAACTATATTCACTGTCCGACCAACGGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAAGTTGCCTGTGGATGTTCTTCTTCCTCCAAAGTGGACTTGTTCAGATAATATTTGGGATTTGAGCAGGTGTACATGTTCCGCACCGGAAGAGATGAACACAAAGGAACAGGAGAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTGCTCAAGAACTCGAGCCTTCTGGTTTGGATGCACTGGCTAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACAACAACTAGGCATCCTCGACACCGACAAGGATGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCATAAATCCACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACGCTCATGCTTCGCAAGAAGAAACGCCTATCAGAACGTGAAATGGAGACTTCACTCAAGGAGGGGAATTCACAATTTGATGAATCAGGAACCAGTGGGACACTGAGGGGTACATCTCTGCAAACAAACCATTCAGAGAACGAAAGAAGTCAGATCCGAGTAAAAGATGAGGAGGCTGCAAATAGCAGTGGCCAAATTGACTTGAACTGCCACCCTGACCGGGAGGACATGCAACTGGAAGTAGCAGGATTAAGCATGATGAGTCTTGTTGAGGCTGCCAGCCAACCTTTAGATAGTTACTCAAAGCAAATTGGCGTCTCCAGCGTCACGAGTGAGCAACAATCCAGTCAACCAAGTAGCGCAGAGAGTGAGAGACGCCTGTCTGAGGAAGGATGCCATGGATCAGCACACGAGAGCACAAGTGATAGATGCAGAGGGCACCATTGA	2583	45.3	MASSRCMNTSCGAATPHDWTKGWPLGSAGFAHLCLNCGSAYENLVFCDTYHSEETGWRDCSFCGKRIHCGCIASKSMFEYLDYGGIGCTTCVKRSRLDVIRRDEISNGFDAATVGNVGLLRPASVEDRVVRNGIKEEKLLQLCNIMEANETDHFQQAQRVDRSASPAQNKGENLRSPFGEVGTSFFNMTKLPVKCQPSVGSVAYSQLDTRLKDMQESLSQPSLNITLGVPLGTPNFVVPLSGSAAEEDEKSILPFQQGQRSRPIFPKPLKTGTTVNSETRKGMTPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQISGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPGGQLVMGFRKATNSSDTQDAKISTLPNGSHSGDASFSGVFQNLPLRAGDISLHKIENFGGRMTSGQQPMSTMDKKGTRNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRKLPVDVLLPPKWTCSDNIWDLSRCTCSAPEEMNTKEQENLLRASKDFKKRKIMKSQKSAQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRQGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRLSEREMETSLKEGNSQFDESGTSGTLRGTSLQTNHSENERSQIRVKDEEAANSSGQIDLNCHPDREDMQLEVAGLSMMSLVEAASQPLDSYSKQIGVSSVTSEQQSSQPSSAESERRLSEEGCHGSAHESTSDRCRGHH	860

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	3921339	3930993	-	Carg07012-RA	Car01g00665	141529

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car01g00665	860	ProSiteProfiles	Zinc finger CW-type profile.	565	615	IPR011124	GO:0008270
	Car01g00665	860	MobiDBLite	consensus disorder prediction	835	860	-	-
	Car01g00665	860	ProSiteProfiles	B3 DNA-binding domain profile.	330	431	IPR003340	GO:0003677
	Car01g00665	860	MobiDBLite	consensus disorder prediction	816	860	-	-
	Car01g00665	860	MobiDBLite	consensus disorder prediction	721	785	-	-
	Car01g00665	860	Pfam	B3 DNA binding domain	330	429	IPR003340	GO:0003677
	Car01g00665	860	MobiDBLite	consensus disorder prediction	816	834	-	-
	Car01g00665	860	MobiDBLite	consensus disorder prediction	478	498	-	-
	Car01g00665	860	MobiDBLite	consensus disorder prediction	479	496	-	-
	Car01g00665	860	Pfam	CW-type Zinc Finger	570	612	IPR011124	GO:0008270
	Car01g00665	860	MobiDBLite	consensus disorder prediction	734	759	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Car01g00665	Car-Chr1:3921339	Car06g00165	Car-Chr6:1001573	0	dispersed
	Car01g00665	Car-Chr1:3921339	Car07g00227	Car-Chr7:1253909	0	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	2824	PF02362	B3	2.00E-16	CL0405	Car	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car01g00665	-		-	cmo:103497016	1497.64