Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00679 ATGCAGCCTCCCCACCTTCTACTTCACCTTCTGCTCTGCCTTCTGCCCTCCCTTTGCCTCATTCCCGCCCTCAAACCAGATCTCACCTCCGACAAGGCTTCTCTTCTCGCTCTCCGTTCTTCCCTCGCCGGCCGAACCATCCAGCTCTGGAATGCAAGCCACGAAACCCCCTGTTCCTGGACTGGCGTCAAATGCCAGGGAAGCCGCGTTACTGTTCTTCGTTTGCCGGGTGCTTCCCTTTCCGGCCAAATTCCGACCGGCATTTTCAGAAATTTGACCCATCTTCGCACTTTGAGTCTCCGACTCAACGCATTGACGGGTCAGCTTCCGTCAGATCTTGCAGCATGCACTAATCTCCGCAGCCTCTACTTGCAGGGTAATGCATTTTCTGGCCCAATTCCTGAGTTTGTCTTCCAATTTCATGACCTTGTTCGTCTTAACTTGGCTTCCAATAACTTCTCCGGCGTCCTGTCTCCCCGTTTTGACAAACTCCGGCGGCTGAAGACTCTGTTTCTTGAGAACAATCGCCTTACTGGCTCGTTACCGGAGCTGAAGCTGCCTAACCTCGTACAGTTCAATGTTTCCAACAATTTCTTTAATGGGTCGGTTCCTCGTCGTTTCCAGTCGTTTCCCTTTACTGCTTTTATGGGTAATCCACTTTGTGGACGACCCTTTGAGAATTGCGCTCGAAATGTCATTGTTCCATTGACAGTGGATATTGATGTTAATGAGAACAAGAGAAGGAAGAACTTGTCTGGGGCTGCGGTCGGAGGGATTGTGATGGGGTCTGTTCTGGGTTTGGTTTTGTTTTGTGTGATTTTGACGGTTTCTTGTCGGAGGCAGAGCGGTCGGAAAACAAGCACTCTGGACATGACAGCCCTTGTCGATGTAGGAGGAGAGAAGGCAATTAGTGAAGAGAATGGGGGGTATGAAAATGGGTGCTCTGTGGCGGCTACGGCGGCGCTAGAGAATAAGAAAGGGGAAGGGGATGACAACGTTGGTGGTGCTAAAAAGTTGGTGTTTTTTGGGAATGCTGGTGGGAGGGTGTTTGATTTGGAGGATCTGTTGAGGGCTTCAGCTGAAGTGTTGGGTAAGGGAACGTTTGGGACAGCTTATAAAGCTGTGTTGGAGATTGGGGCTGTTGTGGCTGTGAAGAGATTGAAGGATGTGAGTGTTTGTGAGAGGGAATTTAGGGAGAAAATTGAAGGTGTGGGAGTAATGGAACATCAGAATTTGGTTGCTCTTAAAGCTTATTATTACAGTGTTGATGAGAAGCTTTTGGTTTATGATTATATGGCTATGGGAAGCTTATCTACACTTTTGCATGGTAACAAAGGAACTGGTAGGACACCATTGAACTGGGAAATGAGGCGTGCCATTGCATGTGGAGCAGCCCGTGGCATCAAGTACTTACATTCTCAAGGCCCAAACGTTTCTCATGGAAACATAAAGTCATCCAACATCTTGCTCGCCAAATCCTACGATGCCCGAGTCTCCGATTTTGGCCTAGCGCAACTAGTTGGCCCAGCATCGAGTCCTAACAGAGTGGTGGGGTATCGTGCACCAGAGGTGACAGATTCTCGTAAAGTATCACAAAAGGCAGATGTTTACAGCTTTGGCGTATTGCTGTTGGAGCTTTTGACAGGAAAGGCCCCGAGTCACGCAGTGTTAAACGAGGAAGGGGTGGATCTACCGAGATGGGTACAGTCAGTGTTGCAAGAGGAGTGGAGGTCGGAAGTTTTCGACGCCGAACTGCTGAGGTACGAGAGCGTTGAGGAGGAGATGGTTAAAATGTTGGAGCTGGCTGTGGACTGTGCGGCGCAACATCCTGATAGACGGCCTTCAATGTATGAAGTGAGTAGCCGCATTGAGGAGTTGTGCAGCCCTTCCGCCCATTCGAATCCCCAGCAACACAACGTTGGTGCTGCTGACAAGCCCTTTGGTGCGTCCACCTCCCATAGTCCGAATGCCAAGTCCATTTGA 1983 49.77 MQPPHLLLHLLLCLLPSLCLIPALKPDLTSDKASLLALRSSLAGRTIQLWNASHETPCSWTGVKCQGSRVTVLRLPGASLSGQIPTGIFRNLTHLRTLSLRLNALTGQLPSDLAACTNLRSLYLQGNAFSGPIPEFVFQFHDLVRLNLASNNFSGVLSPRFDKLRRLKTLFLENNRLTGSLPELKLPNLVQFNVSNNFFNGSVPRRFQSFPFTAFMGNPLCGRPFENCARNVIVPLTVDIDVNENKRRKNLSGAAVGGIVMGSVLGLVLFCVILTVSCRRQSGRKTSTLDMTALVDVGGEKAISEENGGYENGCSVAATAALENKKGEGDDNVGGAKKLVFFGNAGGRVFDLEDLLRASAEVLGKGTFGTAYKAVLEIGAVVAVKRLKDVSVCEREFREKIEGVGVMEHQNLVALKAYYYSVDEKLLVYDYMAMGSLSTLLHGNKGTGRTPLNWEMRRAIACGAARGIKYLHSQGPNVSHGNIKSSNILLAKSYDARVSDFGLAQLVGPASSPNRVVGYRAPEVTDSRKVSQKADVYSFGVLLLELLTGKAPSHAVLNEEGVDLPRWVQSVLQEEWRSEVFDAELLRYESVEEEMVKMLELAVDCAAQHPDRRPSMYEVSSRIEELCSPSAHSNPQQHNVGAADKPFGASTSHSPNAKSI 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4036438 4039480 + Carg06998-RA Car01g00679 141543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00679 660 Pfam Protein kinase domain 360 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00679 660 Pfam Leucine rich repeat 73 128 IPR001611 GO:0005515
Car01g00679 660 Pfam Leucine rich repeat N-terminal domain 30 65 IPR013210 -
Car01g00679 660 MobiDBLite consensus disorder prediction 627 660 - -
Car01g00679 660 ProSiteProfiles Protein kinase domain profile. 357 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00679 660 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00679 Car-Chr1:4036438 Car18g00071 Car-Chr18:369067 0 dispersed
Car01g00679 Car-Chr1:4036438 Car13g00816 Car-Chr13:8917335 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88590 PF00069 Pkinase 5.70E-39 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00679 - - cmos:111452825 1237.63