Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00680 ATGGTATTCAAAGGCAGGTTTTTCTCCTCTTCCAAGAAGTCTGATTCTTCCAGTCCCGATGGATCCAGTCCCCGATTCCTTGGTTCTAACTCGCCCAGTAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATACCACTACTAGTAGCTTTAAAGGTACTGTTCTGAAAGATTCTAGTAGGAGTAAGGATTGGAAACGAAAAGATGGTCAAGTTTTATTGCCGACTGAGACGCCATCGAAGTCCGAGGCAATATCTGGATTGAGCTTAGGGCCGAAGGTTAAGAAGTCGAGCGATGTGAAGGATGTGGCCTCATCGGTTTCGCCTATTCTCGCATCATCCCTTGGATTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTTTTGGGGTTTAAAGGTGATAAGGGCTCATTGGGTTCGAGCAATCTTTCCAGGAACTGTGGCAATGGAAGCTCAGGCTCGAATTCTGGTTCGACATGGTCGGCGTCTTCTAGTGGAGGGAAGAGAGAGGCGGCGAGCCAGAAGAGATTGGGGTTTCAGGACAATGTTAAAAGCTATATTCACAATGCTAGCAATCCCGACAATATGGCAACTGGTAATGCAGCATCTACTGAAAGGAGTCCAAATTTGTTAGGACAGCCTCGGTTGCAGAATGTCGAATCATCCAATGAAGCTGGACGCAATGAATCATCATGGGCATTTTCAGAAGGATCAAGAAACATAGATTTCTGTACGCCAGAGTCTTCTTATGATTGTGAAAATCCAAAAGAGTCTGAATCTCCACGCTTTCAAGCTATACTTCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCGGATATCAAAAGTTTTTCCCACGAACTAAATTCAAAAGGTGTACGACCTTTCCCACTCTGGAAGTCACGTCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGGAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGATTTGGCCATTTTTGCTGCTGATCTGGTTGGAATTCTTGAAAAAAATGTTGATACTCATCCAGAGTGGCAAGAGACCATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCCATGTCATCTCCTGGTGAATTTTGGCTTCAGTGTGAAGGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCAGGCATGCTGAAACAACTTCATACTCGAATGCTGTTCATTCTCACTAGATGTACCAGGCTACTACAGTTCCATAAAGAAAGTGGGTTAGCAGAAGATGAAAATGTTTTTCAGCTTCGTCAATCACGAAATCTTCATTCTGCCGATAAACGTATTCCTCCAGCTATGGGAAGGGAAATGAAAAATTCTAATGCAGCCAAGGCTTCTAAGGCAGCTTCATCCAGGAAATCTTACAGCCAGGAGCAGCATGGCTTGAACTGGAGCAGAGAACACGACATGCTGCCTAGGAATAATGTCTCTGCATCTTCTGATGATACTTCAAAGAAGTTGGAATCTCCTACTGGCAGAGATCGGATGGCTTCTTGGAAAAAATTGCCTTCTCCGGCAGCCAAAAGTGTGAAAGAACCTACTTTGAAGGATAAAGGTGATAATAAGAGTTTTAAATCTTTGAATGTGCCAAAAATCAGGACTGATGTTTCTGAAACTGTTTTTGCTGCTGCAAATGAGCTTCCTCTGCCAAGAGATTCTCATGACCAGCCTACCAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCATCTGTATCTGAGGAGAGTTCAATCATTTGTCGCATTTGCGAAGAAGAGATTCCTACTGCAAATGTGGAAGACCATTCAAGAATTTGTGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTCTAGAGAAGATGATTGAGTCCTTTTCGCAAAAAGATTCTCAACATGTAGGAAGTCCAGATGTTGCAAAAGTTTCAAATTCTAGTATGACTGAAGAATCTGATATTTCCCCGAAACATAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTCGATTGCTTCCATGAAACTGAAAATTCTGTTTTCATGGATGACTTGAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCTGCTGGTAGCATGACTCCTAGATCTCCTTTATTAACACCAAGAACCAGTCCGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACACGATGATCTTACACAGATCAGTGATCTTGCAGATATTGCACGCTGTTCAGCAAATGCTCCTCTGGGTGATGATTGCTCGATGCAATATCTGTTGACGTGCCTTGAAGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCACTGACAGTTGAAACTTTTGGCACTCGCATTGAGAAGTTAATACGGGAGAAGTATTTGCAGCTTTGTGAGCTGGTGGGTGATGAAAAGATTGACATAGCGAGCACTGTTATTGATGAAGATACTCCTCTAGATGATGACGTTGTTCGTAGCTTAAGAACAAGTCCCATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCTATCAGCCGTGGGGCATTTGGCCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTCGCAATAAAGGTTTTGAAGAAAGCTGATATGATTCGAAAAAATGCTGTTGAAAGTATTCTGGCAGAACGTGATATTTTAATATCTGTGCGCAACCCTTTTGTGGTTCGCTTCTTCTACTCCTTTACTTGTCGTGAAAATTTATATCTCGTGATGGAGTATTTGAATGGAGGAGATCTTTACTCCTTGTTGAGAAATTTAGGCTGCTTAGATGAAGAGGTTGCTCGTGTATATATTGCAGAAGTGGTTCTTGCTTTGGAGTATTTGCATTCACTCGGGGTAGTTCATCGTGACTTAAAGCCGGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAAGTTGGTCTTATCAACAGTACTGATGATTTGTCTGGACCAGTTGTTAGCGGTATCACTCTTCATGGGTATGATGAGCCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGAAAGAAGCGTTCTGCTGTTGGCACACCTGACTATTTGGCACCAGAGATACTATTGGGAACTGGACATGGTGCCACAGCTGATTGGTGGTCTGTCGGGATCATTTTATTTGAGCTAATTGTTGGAATTCCACCCTTTAATGCAGAGCATCCCCAGACTATATTTGATAACATTCTCAACCGTAAGATCCCGTGGCCTCAAATACCCGAAGAGATGAGCCACGATGCTCAAGATTTAATTGATCGATTATTGACTGAAGATCCTCACCAGCGACTTGGAGCTATAGGTGCACATGAGGTGAAGCAGCATATGTTCTTTAAAGATATTAACTGGGACACGCTTGCCCGACAAAAGGCTGCATTTGTTCCAACATCTGAAAGTGCTCTTGATACTAGTTACTTTACAAGTCGCTACTCATGGAATCATTCAGATGATCATGGCTATCCACCCAGTGAACTTGAGGATTCAAGTGATGCTGATAGCTTAAGTGGTAACAGTAGTGTGAGCAATCGTCAAGATGAAGTGGTTGATGAATGTGGGGGCCTTACAGATTTTGAGCCTGGTTCTTCTGTCAATTACTCATTCAGTAATTTCTCTTTCAAGAATCTCTCCCAGCTTGCATCCATCAACTATGACCTGCTTTCTAAGGGTTTGAAGGATGATCCTCCCGATCACGATGCATAA 3891 42.69 MVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPSRSDKKKNKSAAKDEPQISNTTTSSFKGTVLKDSSRSKDWKRKDGQVLLPTETPSKSEAISGLSLGPKVKKSSDVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGNGSSGSNSGSTWSASSSGGKREAASQKRLGFQDNVKSYIHNASNPDNMATGNAASTERSPNLLGQPRLQNVESSNEAGRNESSWAFSEGSRNIDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRGKFDKAKEEVNSDLAIFAADLVGILEKNVDTHPEWQETIEDLLVLARSCAMSSPGEFWLQCEGIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIPPAMGREMKNSNAAKASKAASSRKSYSQEQHGLNWSREHDMLPRNNVSASSDDTSKKLESPTGRDRMASWKKLPSPAAKSVKEPTLKDKGDNKSFKSLNVPKIRTDVSETVFAAANELPLPRDSHDQPTKHQHKPSWGWGDQPSVSEESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFSQKDSQHVGSPDVAKVSNSSMTEESDISPKHSDWSRRGSEDMLDCFHETENSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSPFDLFLAGKGAYYEHDDLTQISDLADIARCSANAPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVETFGTRIEKLIREKYLQLCELVGDEKIDIASTVIDEDTPLDDDVVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEEVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPVVSGITLHGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQTIFDNILNRKIPWPQIPEEMSHDAQDLIDRLLTEDPHQRLGAIGAHEVKQHMFFKDINWDTLARQKAAFVPTSESALDTSYFTSRYSWNHSDDHGYPPSELEDSSDADSLSGNSSVSNRQDEVVDECGGLTDFEPGSSVNYSFSNFSFKNLSQLASINYDLLSKGLKDDPPDHDA 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4039881 4057225 - Carg06997-RA Car01g00680 141544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00680 1296 ProSiteProfiles AGC-kinase C-terminal domain profile. 1176 1279 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car01g00680 1296 ProSiteProfiles Protein kinase domain profile. 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00680 1296 MobiDBLite consensus disorder prediction 9 31 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 495 510 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 64 78 - -
Car01g00680 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1005 1017 IPR008271 GO:0004672|GO:0006468
Car01g00680 1296 Coils Coil 640 660 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 189 244 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 573 597 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 726 748 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 1214 1250 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 1225 1242 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 1 113 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 46 63 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 447 551 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 148 181 - -
Car01g00680 1296 Coils Coil 315 335 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 659 682 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 468 486 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 127 244 - -
Car01g00680 1296 MobiDBLite consensus disorder prediction 657 692 - -
Car01g00680 1296 Pfam Protein kinase domain 886 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00680 Car-Chr1:4039881 Car15g01249 Car-Chr15:9748482 0 dispersed
Car01g00680 Car-Chr1:4039881 Car02g00760 Car-Chr2:5550539 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88591 PF00069 Pkinase 1.40E-65 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00680 - - csv:101214945 2247.63