Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00693 TGGATAGTGAAACGGAAAACGCGCATTTACCCAATGGAGTTCGGCACTGGCGGCGGCGGTGGTTGGGACAATGATTCCTCCTCCGACCCACGACGGAGTAGAAAACGCTACCATCGTCACACCGCCAACCAGATTCAGCGGCTCGAAGCAATGTTCAAAGAGTGCCCTCATCCGGATGAGAAGCAGAGATTACAGCTGAGCAGAGAGCTGGGTTTAGCTCCCCGACAGATCAAATTTTGGTTCCAAAATAGGAGGACCCAGATGAAGGCACAACATGAAAGGGCAGATAATAGCGCACTTCGAGCAGAGAACGACAAGATTCGTTGCGAGAACATAGCCATCAGAGAGGCACTCAAGAATGTCATCTGCCCCTCCTGCGGCGGCCCTCCCCTTCACGACGCTTACTTCGATGAACACAAATTAAGAATGGAAAACGCCCATTTGAAAGAAGAGCTTGATAGAGTGTCTAGCATGGCGGCTAAGTACATTGGGCGGCCAATCTCTCAGCCATCTCATTTTTCTTCATTAGAGCTATCCATGAGTAGTTTTAGTTCCCATGAAATGGGATGTTCTTCTCTTGATCTTGATTTGCTTCCTGCAAGTTCTTCAAGTGTTCTTCCAATTCATCTCTCCAATATGGATAAGACCCTGATGAGTGAAGTTGCTACAAATGCCATGGGAGAGTTGCTAAGGCTTTGTCAAACTAATGAACCATTGTGGATGAAATCACGAAGCGATGGACGGGATGTTCTTGATCTCGAAACGTATGAACAGGCTTTTCCAAGAGCCAATGCGCCGTTGGAGAATCTCCATTTTCGTACCGAAGTGTCTAGAGATTCCGGGGTGGTGATCGTGAATAGTGCAACGTTGGTTGATATGTTTATGGACTCGAACAAATGGAGTGAGTTATTTCCGACGATTGTTTCGAGTGCAAGAACGATTGAAGTTATATCGTCCGGGATGTTGGGAAGTCATCATAATGGCTCGTTGCAACTGATGTACCTAGAATTGCAGCTACTTTCCCCATTGGTTCCGACTCGCCATTTTTACGTTCTTAGATATTGTCAACAAATCGAGCAGGGAATGTGGGCTGTAGTCGATGTTTCGTATAACGTCACCGGAGGAAGCCAAATGGTTTCTCATTCTCAATGTCGTCGCTCTCCCTCGGGCTGCTTGATCCAGGACATGCCTAATGGTTATTCCAAGGTCACTTGGATTGAGCATGTGGAAGTGGAAGATAAAGGCTCAACTCATTGGCTTTTTAGAGATCTTATTCATAGTGGATTAGCCTTCAGTGCCGAACGGTGGCTCGCAACGCTTCAACGAACGTCCGAAAGATTTGCCTGTTCAATGGTTACTAGTAGTTCGAGTCAGGATCTCGGCGGAGTCATTCCATCATTAGAGGGAAGGAGAAGCATGATGAAACTAGCACAGCGGATGGTGAACAATTTCTGCGCTAGTATCACTACGTCTCATGGTCACCGTTGGACGACTCTATCTGGGACGGATGAGGTCGGTGTTTGTGTCTCGGTTCATAAAAGTATGGATCCTGGTCAGCGTAACGGCGTGGTTCTTAGTGCAGCTACAACCATATGGCTCCCTGTTCCTCCTCAAACCATCTTTAACTTCTTTAAGAATGACAGAACCAGATCTCAGGTAGTTGATACTCAAAATCTCAAACAGTTTACAATGACAATGACATCATTAACTGAAAGTTCATTGCTGCATCAGTGGGATGTCCTGTCGGATGGCAATCCAGTTCAAGAGGTTGCTCATATCACCAACGGATCCCATCCAGGAAACTGCATATCTGTTCTTAGAGCTATGAATTCGACACAGAACAACATGTTGATACTCCAAGAAAGTTGCATAGACTCATCTGGATCACTTGTTGTGTACTGCCCTGTGGATCTACCAGCCATGAATCTTGCAATGAGTGGGGAAGATCCATCAAGCATTCCTTTACTACCATCAGGATTCGCGATTCTCCCGGACGGTCGACAGGATCAAGGAGAGGGCGCATCGAGCAGCTCGGACGTGCACAACCGGTCAGGTGGGTCGTTGGTCACGGTAGCGTTTCAGATACTCGTAAGTAGCTTGCCATCCGGGAAGCTGAATTTGGAATCAGTGACAACGGTTAATAACCTCATTAGTACCACTGTCCACCAAATCAAAACAGCCTTAAATTGTCATAGCTCCTCCTGA 2205 46.8 WIVKRKTRIYPMEFGTGGGGGWDNDSSSDPRRSRKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRAENDKIRCENIAIREALKNVICPSCGGPPLHDAYFDEHKLRMENAHLKEELDRVSSMAAKYIGRPISQPSHFSSLELSMSSFSSHEMGCSSLDLDLLPASSSSVLPIHLSNMDKTLMSEVATNAMGELLRLCQTNEPLWMKSRSDGRDVLDLETYEQAFPRANAPLENLHFRTEVSRDSGVVIVNSATLVDMFMDSNKWSELFPTIVSSARTIEVISSGMLGSHHNGSLQLMYLELQLLSPLVPTRHFYVLRYCQQIEQGMWAVVDVSYNVTGGSQMVSHSQCRRSPSGCLIQDMPNGYSKVTWIEHVEVEDKGSTHWLFRDLIHSGLAFSAERWLATLQRTSERFACSMVTSSSSQDLGGVIPSLEGRRSMMKLAQRMVNNFCASITTSHGHRWTTLSGTDEVGVCVSVHKSMDPGQRNGVVLSAATTIWLPVPPQTIFNFFKNDRTRSQVVDTQNLKQFTMTMTSLTESSLLHQWDVLSDGNPVQEVAHITNGSHPGNCISVLRAMNSTQNNMLILQESCIDSSGSLVVYCPVDLPAMNLAMSGEDPSSIPLLPSGFAILPDGRQDQGEGASSSSDVHNRSGGSLVTVAFQILVSSLPSGKLNLESVTTVNNLISTTVHQIKTALNCHSSS 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4139304 4142170 - Carg06984-RA Car01g00693 141557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00693 734 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Car01g00693 734 ProSiteProfiles START domain profile. 211 449 IPR002913 GO:0008289
Car01g00693 734 MobiDBLite consensus disorder prediction 13 39 - -
Car01g00693 734 Pfam START domain 221 445 IPR002913 GO:0008289
Car01g00693 734 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Car01g00693 734 Pfam Homeodomain 34 89 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00693 Car-Chr1:4139304 Car19g00719 Car-Chr19:8221874 0 dispersed
Car02g01388 Car-Chr2:9122699 Car01g00693 Car-Chr1:4139304 0 dispersed
Car01g00693 Car-Chr1:4139304 Car13g00931 Car-Chr13:9550277 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2827 PF01852 START 3.70E-45 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00693 K09338 - csv:101215660 1160.98