Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00706 ATGGGGAGGAAGAAGAGAACTGAAGGTGGTGGTGAGAGATCAGAGTCTCAGGACGTTGGTGGCCGTGGCTCCCAAGGATTTGCTGAAAGGAGAGACTTCCCACAGCAACATAGTGGCAGTGCATACCAGGGTGGGGGGAGAGGCTGGGCTTCTCAAGGGGGACGTGGAGGTCAAGGTGGTGGTCGTGGCCGAGGGACGTCTCAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGAAGGGGTAGAGGTGGGCAATATCAGCATGGAGGACGCAGTAACTATGGTGGTGGTAATCGCGGTGGCATGGGTAGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGCCCATCCAGGCCATCAGTTCCCGAGCTGCACCAAGCAACCCCAGTGTATCAAGGTGGGGTGACTCAGCCAATCTCATCTGTGGCGAGTTCTTCCTCCCACCCACCTGATACCTCATTGTTAGAACAACAATTTCAGCAGATTTCCATTCAGCAGGAATCTGCTCAAAGCCAAGCAATTCAACCTGCACCGCCGTCTAGTAAATCTATGAGATTCCCTCTGAGACCAGGAAGGGGTAGCACTGGCACAAGGTGTATTGTCAAGGCTAACCACTTCTTTGCGGAGCTTCCAGATAAAGATCTTCATCAGTATGATGTTACTATTACGCCAGAAGTCACTTCGCGTGTCTATAGTCGAGCTGTAATGGAGCAGCTGGTGAAGTTATACAAGGTCTCTCACCTTGGAGATCGTCTTCCTGCCTATGATGGAAGAAAAAGTTTATACACTGCTGGTCCTCTTCCTTTCATATCAAATGAGTTTAGAATAACTCTTTTTGACGAGGAAGATGGATCAGGAGGACAAAGGCGGGAGAAAGAATTTAAAGTCGTAATCAAATTTGCTGCTCGTGCTGATCTACACCATTTAGGACTCTTTCTTCAAGGCAGACAGGCTGATGCCCCTCAGGAAGCCCTTCAAGTTCTGGATATTGTTTTACGCGAATTGCCTACTTCAAGGCATGACTATTACTCTACACCTTTGTCACTGGATATTTGGTATTCCCCTGTGGGCCGATCATTTTACTCTCCAAACCTTGGTAGACGTCAGACACTGGGTGAGGGGCTGGAAAGCTGGCGTGGCTTTTATCAGAGTATCCGTCCTACTCAAATGGGGCTCTCTCTAAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTTATCGACTTTGTGACTCAGCTTCTCAACCGCGATATGTCATCCAGACCATTATCTGATGCGGACCGTGTTAAGATAAAGAAGGCTCTTCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGGTTGACATCACAAGCAACGCGGGAGCTAACTTTCCCGGTTGATGAAAGAGGTACTATGAAATCGGTGGTGGAGTACTTCTATGAAACGTATGGGTTTGTTATTCAACATACTCAGTGGCCTTGTCTTCAAGTAGGGAACCAGCAGAGACCTAACTATCTACCGATGGAAGTATGTAAGATTGTTGAAGGACAGAGGTATTCCAAACGGCTCAACGAGAGACAGATAACTGCTCTGCTCAAGGTTACATGCCAACGACCACACGATAGAGAGGCAGACATTATGCAGACAGTACGTCATAATGCATATCATAACGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCTCCACCATGGCTAAAATATCATGACACAGGCAGAGAAAAAAATTGCTTGCCACAAGTTGGACAGTGGAACATGATGAATAAGAAAATGTTCAATGGTGGTACTGTAAACAACTGGATGTGTGTAAATTTCTCTCGCTCTGTGCAAGAGAGTGTCACTAGCAGGTTTTGTTATGAACTGGCTCAAATGTGTTACATCTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCCCGTCCTGATCACGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCGACCCCAGGGCAAGGAACTTGATCTGCTTATTGTTGTTTTGCCAGATAACAACGGATCTCTCTATGGTGATTTAAAACGTATCTGTGAAACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTTAAAATGAGTAAACAATATTTGGCCAACGTGGCCTTAAAAATAAATGTTAAGGTTGGGGGAAGGAATACAGTACTCGTTGATGCATTATCTAGGAACATACCCTTGGTTAGTGACCGGCCGACCATTATATTTGGTGCTGACGTAACCCATCCTCACCCAGGGGAAGACTCAAGTCCATCCATTGCTGCTGTTGTGGCTTCTCAAGATTGGCCGGAAGTTACAAAATATGCCGGTTTGGTCAGTGCTCAAGCCCATAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTGAGGGGGACAGTGACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGCATCATATTTTACCGGGATGGTGTTAGTGAAGGACAATTCTACCAAGTTTTGTTACATGAGCTGGATGCCATTAGAAAGGCTTGTGCTTCTTTGGAACCAAACTACCAACCTCCAGTGACTTTCGTCGTGGTACAGAAGCGTCATCACACTAGGTTGTTTGCTAATAACCATTCTGATCGCCATGCAGTCGACAAGAGTGGGAATATATTACCTGGTACGGTTGTCGACTCCAAAATTTGTCATCCTACGGAATTTGACTTCTACCTTTGCAGCCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAAAATAAGTTCACAGCTGACGGATTGCAGACTCTAACAAATAACCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTATGCTCATCTTGCTGCATTCCGAGCTCGCTTTTATATGGAACCTGAAACCTCTGATATTGGATCAATCAGCAGTGATGCTGCTGCTGGACGTGGTGGCGTTAGTGGCGCTCGCAGTACACGGTCTCCAAGTATGAATGCTGCAGTTCGACCTTTGCCAGCTCTCAAAGAGAATGTTAAGAGGGTTATGTTCTATTGTTGA 3216 46.36 MGRKKRTEGGGERSESQDVGGRGSQGFAERRDFPQQHSGSAYQGGGRGWASQGGRGGQGGGRGRGTSQHQHYGGPPDYQGRGRGGQYQHGGRSNYGGGNRGGMGSGGIGGGPSSGGPSRPSVPELHQATPVYQGGVTQPISSVASSSSHPPDTSLLEQQFQQISIQQESAQSQAIQPAPPSSKSMRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYSRAVMEQLVKLYKVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRHDYYSTPLSLDIWYSPVGRSFYSPNLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDMSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHDREADIMQTVRHNAYHNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGREKNCLPQVGQWNMMNKKMFNGGTVNNWMCVNFSRSVQESVTSRFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILRPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRNIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDIGSISSDAAAGRGGVSGARSTRSPSMNAAVRPLPALKENVKRVMFYC 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4199722 4206889 - Carg06971-RA Car01g00706 141570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00706 1071 Pfam N-terminal domain of argonaute 199 333 IPR032474 -
Car01g00706 1071 MobiDBLite consensus disorder prediction 164 180 - -
Car01g00706 1071 MobiDBLite consensus disorder prediction 1 15 - -
Car01g00706 1071 Pfam Mid domain of argonaute 605 679 IPR032473 -
Car01g00706 1071 ProSiteProfiles Piwi domain profile. 698 1019 IPR003165 GO:0003676
Car01g00706 1071 Pfam Glycine-rich region of argonaut 73 180 IPR024357 -
Car01g00706 1071 Pfam Piwi domain 699 1018 IPR003165 GO:0003676
Car01g00706 1071 MobiDBLite consensus disorder prediction 1028 1050 - -
Car01g00706 1071 Pfam Argonaute linker 2 domain 548 594 IPR032472 -
Car01g00706 1071 ProSiteProfiles PAZ domain profile. 408 522 IPR003100 GO:0005515
Car01g00706 1071 Pfam Argonaute linker 1 domain 356 406 IPR014811 -
Car01g00706 1071 Pfam PAZ domain 413 537 IPR003100 GO:0005515
Car01g00706 1071 MobiDBLite consensus disorder prediction 164 194 - -
Car01g00706 1071 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00706 Car-Chr1:4199722 Car14g01580 Car-Chr14:12873168 0 dispersed
Car01g00706 Car-Chr1:4199722 Car13g00944 Car-Chr13:9613301 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00706 K11593 - csv:101212130 1831.99