Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00733 ATGGGTGTTGTTGTAGCTCAGTTTTTGTTGGTGACCCTTTTTATTTTATGCTCCTTTGTCCATGGATATCGTGGAACCAATTGGGTGAACGGCGCTCATGCTACTTTCTATGGAGGTCCCGATGCCTATGGCACATTGGGTGGGGCTTGTGGATATGGAAATGTATACAGCGAGAATTACGGGATTAAAACGACGGCGTTGAGTACAGCCTTGTACGACAATGGGCTGAGTTGTGGGGCTTGTTTTGAGGTCAAATGTGTGAACGACCCAAAATGGTGCCTCCCCGGCTCCGTCGTAGTCACCGCCACTAACTTCTGTCCTCCGGGCGGTTGGTGCGATCCTTCACTCCGCCATTTCGATCTCTCTCAACCTGCCTTCCAAAGCATCGCTCAAACAATCGCCGGAGTCGTTCCCGTTGCTTATCGAAGGGTTAGATGTGCAAGAAGGGGAGGAATTAAGTTCAGAATAGACGGAAATCCCTACTTCAATTTGGTACTCGTAAGCAATGTGGGAGGCGCAGGGGATGTTCATGCTGTTTACATTAAAGGGTCTAGGACTGGTTGGAGGGCCATGATCAGAAATTGGGGTCAAAACTGGCAGAGCAACGATTATCTTGTAGGACAATCCCTCTCTTTTAGGGTCATTACCGGTGATGGTCGCTCGGTTGTGTCCTACAATGTTGCCCCTTCTGGCTGGGAAGATATTAGTTTCTATCATGGCCTAAAATCTGGCCTACACCATTTGTTCTTCAACCAGCTGAAACAAAGATTTAGATTTATGGATATGGCAATGGACCCTGAGATTAAAGCTTCGGCTGCTGTCTTCTGGCCGAGCGCGTCAAGATCGAGGTTCCTTTCGGGGTCGTCGGGAAAGTTTAACAGAGCTTTGTCTGTTAAGCCAACAACTTCTCTAGTTCCCAGTTCTTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGCTCCCAGGTTTGCCATCCCCAGCTTACCTTGATGGCAGTCTTCCAGGTGACAATGGGTTTGATCCTTTGGGACTTGCAGAGGACCCTGAAAACTTGAGGTGGTATGTGCAAGCAGAGCTTGTGAACGGCCGATGGGCAATGCTTGGAGTTGCAGGTATGCTATTGCCTGAAGTCTTCACAAGTTATGGAATCATCAACGTACCAAAATGGTACGATGCGGGGAAAGCCGAGTATTTTGCATCGTCGTCGACTCTCTTTGTGATCGAGTTCATTCTGTTCCATTATGTGGAAATCAGAAGATGGCAAGACATAAAGAACCCAGGAAGTGTAAACCAAGATCCCATTTTCAAGCAATACAGCTTGCCACCAAATGATGTTGGATATCCAGGGGGAATTTTCAACCCACTCAACTTTGAACCAACTCTTGAAGCCAAGGAAAAGGAGATTGCTAATGGAAGATTGGCAATGTTGGCATTCTTGGGATTCATCATTCAACACAATGTGACTGGAAAAGGTCCATTTGACAACTTCTTGCAGCATATATATCAGATCCATGGCACAACACTATTGTCCAAACGCTAA 1536 46.88 MGVVVAQFLLVTLFILCSFVHGYRGTNWVNGAHATFYGGPDAYGTLGGACGYGNVYSENYGIKTTALSTALYDNGLSCGACFEVKCVNDPKWCLPGSVVVTATNFCPPGGWCDPSLRHFDLSQPAFQSIAQTIAGVVPVAYRRVRCARRGGIKFRIDGNPYFNLVLVSNVGGAGDVHAVYIKGSRTGWRAMIRNWGQNWQSNDYLVGQSLSFRVITGDGRSVVSYNVAPSGWEDISFYHGLKSGLHHLFFNQLKQRFRFMDMAMDPEIKASAAVFWPSASRSRFLSGSSGKFNRALSVKPTTSLVPSSFKVEAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTSYGIINVPKWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNDVGYPGGIFNPLNFEPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNFLQHIYQIHGTTLLSKR 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4473173 4476467 - Carg21680-RA Car01g00733 141597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00733 511 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Car01g00733 511 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Car01g00733 511 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Car01g00733 511 Pfam Lytic transglycolase 64 141 IPR009009 -
Car01g00733 511 Pfam Chlorophyll A-B binding protein 325 484 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00733 Car-Chr1:4473173 Car10g00188 Car-Chr10:902985 2.07E-108 dispersed
Car12g00507 Car-Chr12:3351210 Car01g00733 Car-Chr1:4473173 7.26E-56 dispersed
Car18g00644 Car-Chr18:7714155 Car01g00733 Car-Chr1:4473173 3.23E-41 dispersed
Car01g00733 Car-Chr1:4473173 Car10g00187 Car-Chr10:901163 2.99E-148 wgd
Car01g00733 Car-Chr1:4473173 Car11g00156 Car-Chr11:866857 1.82E-126 wgd
Car01g00733 Car-Chr1:4473173 Car15g00262 Car-Chr15:1437362 1.00E-114 wgd
Car01g00733 Car-Chr1:4473173 Car04g01707 Car-Chr4:9792612 1.00E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00733 K08910 - csv:101218675 448.743