Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00776 ATGGGTAGAGGAAAGATTGAGATAAAGAGAATCGAAAACACAACAAATCGTCAGGTCACCTTCTGCAAGAGAAGAAATGGTCTCTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAGTACTCCAACAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAAGAACTGAAGCAGCTGGAGAATAGGCTCGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCTGAAATTGAGTACCTGCAGAAACGGGAGATCGAACTCGAGAACGAAAATGTGTGTATTAGAACCAAGATAGCAGAGGTGGAGAGGCTTCATCAAGCAAACATGGAGTCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATCATGGAAGGTGGAGCTATGAAGGACCCGTTGGAGAGGACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTCCCTCACTCGGATCTCTTCCACCATATTCATGATCGCTTCGCCGGTCGCTACAATTCCTGTTACTATCGTCCCGGAAAGACCAGTCAGAAGGAGCAGAGGTACGCTCGAGCCTACATCGATTTTACCATACCTGAAGATGTTTTTGAGTTTGCGGAGTTTTTTGATGGCCATGTTTTCGTCAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCTCCTTCACAGCGTGTTCCGAGGTCGTCTTCTAAGAAGGATGGTCGTGAGGGGACTATATACAAAGATCCAGATTATTTGGAGTTTTTAAAACTCATTGCCAAGCCTACCGAGCATCTTCCAAGTGCAGAAATACAGTTGGAAAGAAAAGAAGCAGAGCAATCTGGTGTTGCAAAAGATACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGTGGAACTCAGTATATTTTGAAGGACAGTGGGAAGAACACGAACCGCAGAGACAAGTCAAATTTCATTTTGGTGCCGAGGCGAGAGGATCAGTCAGCCACTTCAAGTGGAATTGGAATTTCTGACGTTGGTACAGCCGACTCTGGAAAGAAAAAAATTCTGCTTCTCAAAGGGAAAGGGCGAGACGTATCTCATATTGCTGATGGCATGTTACAGTTTCAGAGCGCGACATCTTCTGGGAATTCTCCTGCTAATGCTACAAAACAGAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATTCTTTTAAATAATGATGCACGTCATGGACAGAGTTCATCAGTAGCCCAGTCTCACCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATTCTCGATCTGGGTCTAATGATATGTCCAGTAATGATCCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGGTATGGAAAATAAGTTTAACAAAAAGGAACATCATGGCCTGGGTAATGCTAGTGAGAAGCAAGAAAAACGAATTAGAAACAAAGATAGACCTGATCGTGGGGTTTGGGCACCACGTGGTCGTTCAGATGCCTCAGTCTCACAACTTGATGAATCCTCTGTTTCACAATCTACTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGATGATGTTCATGGAAGCAGGACTGGGGATGTTACAACCACTGTGAGTGGACGTAGCAGTTCAGTGGAGAATGGTTTGGTTAGACATGTTGGGCGTCGTGGGGCTGTCCATATTATGAAGGATGATGGATCTTTGAACCCAAATGAAGGAAAACCATCCAAAAGAGGTGTTGCAGGTGGCCATGAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGGATTGTCTCCATTTCTGAGGATTAAAAAATGCACATCCTCAGAAGGCATTCACCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTTGTCGTATACAGGTGGTAA 2133 44.54 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLHQANMESGQELNAIQALASRNFFSPNIMEGGAMKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNSCYYRPGKTSQKEQRYARAYIDFTIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLEFLKLIAKPTEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQYILKDSGKNTNRRDKSNFILVPRREDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATKQNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDMSSNDPNPSGSEGDGKRGMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDASVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGLVRHVGRRGAVHIMKDDGSLNPNEGKPSKRGVAGGHEKQVWVQKSSSDNGIQTGLWFLKLPGGLSPFLRIKKCTSSEGIHHVKWRYALEAVGNSNRFRELDCKICNCFVVYRW 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4759735 4770198 - Carg21723-RA Car01g00776 141640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00776 710 Coils Coil 80 119 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 342 378 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 346 360 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 570 595 - -
Car01g00776 710 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car01g00776 710 ProSiteProfiles K-box domain profile. 43 133 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00776 710 Pfam K-box region 62 127 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car01g00776 710 Pfam Smg-4/UPF3 family 171 333 IPR005120 -
Car01g00776 710 MobiDBLite consensus disorder prediction 497 536 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 580 595 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 544 558 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 445 492 - -
Car01g00776 710 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car01g00776 710 MobiDBLite consensus disorder prediction 445 558 - -
Car01g00776 710 MobiDBLite consensus disorder prediction 410 430 - -
Car01g00776 710 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car01g00776 710 MobiDBLite consensus disorder prediction 362 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00776 Car-Chr1:4759735 Car03g01215 Car-Chr3:9481463 6.14E-60 dispersed
Car09g01151 Car-Chr9:12132485 Car01g00776 Car-Chr1:4759735 9.93E-11 transposed
Car01g00776 Car-Chr1:4759735 Car09g01150 Car-Chr9:12127065 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2839 PF03467 Smg4_UPF3 7.10E-49 CL0221 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00776 K14328 - csv:101208317 810.061