Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00778 ATGGAGAGGTTTGAGCCATTGGCTATGATTGCAATGATTTTGACAATTTGTTTGTGTTTGAGTACTCCTAAGGCTTGCTCACAGGCGGATCAGGGCGGCGGTGTTCCTGGATTTTTCATTTTTGGTGATTCCTTGGTGGATAATGGCAACAACAATGGTTTACTTACCCTTGCAAGAGCCAATTATAGGCCCTATGGAGTTGATTTCCCACAGGGCACTACAGGCCGCTTCACTAATGGCCGGACATTCGTTGATGTCTTAGCTCAGCTACTGGGGTTTCGGACATTCATTCCCCCATACACTAGAACTCGAGGTAGAGCCCTTCTAAGAGGAGCAAATTATGCATCGGGCGCTGCAGGGATTCGTGATGAGACTGGAAACAATTTGGGTGGTCATGTATCTATGAACAACCAAGTGGAGAACTTTGGAAGAACGGTGGAAGAAATGAGTAGGTTTTTCAGAGGAGATACTGAGGCACTCGGTTGCTATCTAAGCAAATGCATTTTCTACTCGGGCATGGGAAGCAATGACTATCTTAACAATTACTTCATGACTGATTTTTACAACACCAAATCTCAATACACTCCTCAAGCCTATGCCTCTGCCCTTCTTGAGGACTACTCTCGCCAACTTAGAGCCCAGCATCCTTCCTGGCACACCACCTCATGTCCACCCCTTTTGGGGCTAAGCCTCCTCACCGGCTCTCCAATTGATGTGGGACCTCACAATCCACCCCCTTTGGGGTCCAACGTCCTTCCGGCACACCACCTCGTGTCCGCCTCCTTCAGGGCTAAGCATCCTCGACGGCACATAGCCCGGTGTCTGCAATTGTACCAATTCGGAGCTCGAAAAGTGGTGGTGACAGGGGTGGGGATGATCGGCTGCATTCCTTATGAGCTTGCAAGATATCAAGGCAATAGTAGCCGCTGCAACGAAGAGATCAAACATTGTGTTGGCCAAGATGGCATTCAGCTCCCCTTCAAGAGCCTATGCATATCCCATCAACATTCAACAATTGGCAGCGTTGTAGGAGCTGGATTCCCCGGCACAGAGCACACCTCCAACTACACTCACTCCAACATGTCCATTCTCAACGGAACCCTCCAAAAATCTCTGTGGGTTCTTCAAATCAACGACCTCATTGACCGAAATGCCCTCCCCGCCGCTTCTCGTACCCCCATTTCCGTCTTTCAGCTGCCGGAATCCGTCCGCGACGGCGACCCGGCGGCGTACCTCCCCCAGTTCATCGCGTTGGGGCCGTACCATCATTTCCGGCCAGAGATTTTCAAAATGGACTTGTTCAAACTTGGGAAAGCCAAGAATCTGAAATGGAGACCTCAACTTCATGAACTTGCAGATCAGCTTAAGCCATTGGAGCTCCAAATCCGAGGCTGTTTCTGTGGATCCCTTGAAATTGATGGCGAAACCTTATCATGGGTTGTGCTCATTGATGGTTTGTTTTTAATTCATTTACTTCAAAATGAGTTCAGTAATCGTCCCCTTAAGCTCCCCTTAGAGATCTTTTATGGGAAATTATGGTCTGAGTTTGAGATTGTTAGTGATATGATGAAGCTTGAGAATCAGATTCCATTACTTGTTCTTAAAGAAATTTGCCCCGATGAACCCTTTAACTATTTGGCTCCTCTGTTTTACCAATTTTCTGCTTCTGTTTCCCCATTTGAGTTGGTATGTTTTGGATTTGCCTCCAATTTGCCTGAAATCTTCGATTCTTCCTACCATTTGCTACATTTTGTGTATTTTCTAATCTTGCTTATTCCTGATGAGATGGCTGTGGCAAATATCTGTGCTTATTCTATGCCAATTGGAATGGATTCTTCTTCTTCTTCTTCTTCTGTTGAGTTTTTAGGTGAGAGTTTGAACATTTTGGGGTCTGTTATTAACATAGCCTTCATTCAACAAGTGAAAGAGACATTTGGTTTAATTCAACGTTTGTTTAGACTATTAGGATCTATAACAAAGCCAAATTTGTGTGAGAAAAAGCTCCCTATGATAATCCCTTCTGCTTCAGACTTGAAAACTGCAGGAATCACATTCAAATCCACCAAAAATGGCGTTTTAAAGTGTCGTTTTGATGAGAAAACGCTCACTTTAACATTGCCTTCCATTCATCTTGATGGGTTCTCTGAAGTTCTGCTTAAAAACCTAGTGGCATTTGAAGCAATGGCAGAGCTGAATCCGCAGTGTTTGGTGAATTACATTGCCTTAATGAAAGGGCTATTGAGAAACTCCAAAGACTTGAAGATTTTGGTGAAAGCAGAGATTGTTGACAACCATTTGAGCAGTGAAGAACAGGCTGTGGAGGTGTTTAATGGGGTTGAGAATTCAACCAGCAGCTTGAAGAAAGAGGAGGTTTTGAATATCCATCTCAAAAGTGGTCTGGATTGTGAGATTGGAAGTGGGTTCATTCAAGATATCAAGATGAACTATGAAATGGGATTGGGGAGTATGGTTGAAGAGATCAATAAATGGTATGGGAGCTGCTGGAGGATGAAGATGAAGAAGTTCATGTCTGTTGTTTTCAAGTGTTTTGCAGTTCTTGTCGTTGTGTTTGTGATTGTTCTTGTGATTGCTCGATTTGTTTGCAATTTTGTTAGCTGCTCTGTCGGAATGTTTAAAACCAGTGATGCTCTGCATCAGATGTATTGA 2667 44.28 MERFEPLAMIAMILTICLCLSTPKACSQADQGGGVPGFFIFGDSLVDNGNNNGLLTLARANYRPYGVDFPQGTTGRFTNGRTFVDVLAQLLGFRTFIPPYTRTRGRALLRGANYASGAAGIRDETGNNLGGHVSMNNQVENFGRTVEEMSRFFRGDTEALGCYLSKCIFYSGMGSNDYLNNYFMTDFYNTKSQYTPQAYASALLEDYSRQLRAQHPSWHTTSCPPLLGLSLLTGSPIDVGPHNPPPLGSNVLPAHHLVSASFRAKHPRRHIARCLQLYQFGARKVVVTGVGMIGCIPYELARYQGNSSRCNEEIKHCVGQDGIQLPFKSLCISHQHSTIGSVVGAGFPGTEHTSNYTHSNMSILNGTLQKSLWVLQINDLIDRNALPAASRTPISVFQLPESVRDGDPAAYLPQFIALGPYHHFRPEIFKMDLFKLGKAKNLKWRPQLHELADQLKPLELQIRGCFCGSLEIDGETLSWVVLIDGLFLIHLLQNEFSNRPLKLPLEIFYGKLWSEFEIVSDMMKLENQIPLLVLKEICPDEPFNYLAPLFYQFSASVSPFELVCFGFASNLPEIFDSSYHLLHFVYFLILLIPDEMAVANICAYSMPIGMDSSSSSSSVEFLGESLNILGSVINIAFIQQVKETFGLIQRLFRLLGSITKPNLCEKKLPMIIPSASDLKTAGITFKSTKNGVLKCRFDEKTLTLTLPSIHLDGFSEVLLKNLVAFEAMAELNPQCLVNYIALMKGLLRNSKDLKILVKAEIVDNHLSSEEQAVEVFNGVENSTSSLKKEEVLNIHLKSGLDCEIGSGFIQDIKMNYEMGLGSMVEEINKWYGSCWRMKMKKFMSVVFKCFAVLVVVFVIVLVIARFVCNFVSCSVGMFKTSDALHQMY 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4781447 4787929 - Carg21725-RA Car01g00778 141642

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00778 888 Pfam GDSL-like Lipase/Acylhydrolase 39 319 IPR001087 GO:0016788
Car01g00778 888 Pfam Plant protein of unknown function 396 860 IPR004158 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00778 - - - csv:101209690 697.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00778 Car-Chr1:4781447 Car09g01146 Car-Chr9:11964324 1.20E-75 dispersed
Car09g01145 Car-Chr9:11955437 Car01g00778 Car-Chr1:4781447 3.23E-21 dispersed
Car13g00780 Car-Chr13:8664289 Car01g00778 Car-Chr1:4781447 1.85E-11 dispersed
Car01g00778 Car-Chr1:4781447 Car09g01144 Car-Chr9:11933907 1.31E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000670 5 3 1 2 1 2 4 2 2 2 2 2 5 2 3 5 2 0 2 2 2 5 6 6 8 2 8 2 6 0 94
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00778 Car_Chr01 FPKM 0.0 0.0 1.775569 0.995635 0.0 0.0 0.0 1.287777 1.041674 0.564618