Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00780 ATGGGCTGCATTTGCTCAAGAGATTCCTCAGGACCAGAAGATAGCAATCAGAAAGAGTCTAGAACGGGGAAAGATGTGAACAAATCATCAGTTCAATTGGTTGCTCCTTCTCCCTCTAAAGGAGAGGATTTGTTGTCAGAGATTAAGTTGTCAAGGCAGGCATCTAAAGCAAATGGAGGTTCTGTTCATAAAACAAAGGCCAATGGAGGGTCTGTCCATCGAGCAAGGGAGGACGATGAATCCATTAAGCCTGCAAAAGCAAAAGCAGATAATAGTTCGGCAGCTGGAAGAAAGCCCGACATTTTTAGGTTAGCTAGCTTGTCTAAAGTTGCAGAAGCTGAATATGTGATGGCTGGATGGCCTTCATGGTTAGCTTCTGTTGCTGGAGAAGCCATTAAAGGGTGGGTTCCCCGCCGGATTGACTCCTTTGAGAAGTTAGAAAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGAGACCTTGAAACTGGAAAAACCGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCGAGAAAGTGTCCGTTTTATGGCCAGGGAAATCTATATTTTGCGTAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTTTAGTTACTTCCAAAATGTCGGGTAGCTTGCACCTTGTTTTCGAGTACATGGACCATGACCTTGCAGGCCTTGCTGCAGCTCCTGGACATAAGTTTTCTGAGGCTCAGATTAAATGTTATGTGCAACAATTGATGCAAGGACTCGAACACTGTCATAGTCGAGGAATTCTGCACCGAGATATCAAAGGTTCAAATCTTCTCATTGACGATAATGGTGTGCTCAAGATTGGAGACTTTGGTCTAGCTACCTGTTTTCAACCTGATCAAAAGCAGCCATTGACGAGTCGGGTGGTGACATTGTGGTACAGAGCACCTGAGCTTTTGCTTGGTGCCACTGAATATGGACCCGCCATAGATCTCTGGAGCTGTGGCTGTATCGTTGCTGAACTATTTGCTGGAAAGCCTATTATGCCGGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCGTCTGAGGAGTTCTGGCGGAGAACAAAGTTGCCACTTTCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCATTTCTGAAACATTCAAAAGTTTCCCTCCTCCAGCTCTGGCTCTTGTTAATAAACTACTTGCTATTGAACCAGAGCACAGAGGATCCGCTGCCGAAGCTCTCAGAAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCTTCAAGCTTGCCAAAATATCCTCCAAGCAAGGAATTCGATGCCAAGCTCCGGAATGAAGAAGAAAGAAAGAGAAAAGCATTAGCTGTGAAGGGACACCATCCCGAATCAGTAAGAAGGGGCTTGAGAGACACCAAGGCTGCTCCGACTCCCGAGTTCAACACTCAAGGAGACTTTACGATTAAGGTACACCCGATTGCTAAAAAGATGAGTATGAAATACAACCCTCAAGGGGACGGTGAGCCTCCTAGAGTTGCTCAGAGTCGGTACACCCACTCAACATCTATGGTGCACCCGACTATTGCAAGTTCATGGTGTAAGCCCACCGGGGCATCAAGAAATTGTGCAGATTTGAGGACACAGAAATCTCAGATGCATCAGACAGTGGGCGATTCGGCAACCTCTTCGCTCACAAAGGAGGACGGAGTGTGTACTAAAGATTCTGGAATGGGATATGTGCAAAAGAAGAACAGAATACATTACTCGGGACCGTTGGTGCCTGCAGGGGGAAGCATTATTGAAGACATGCTGAAAGAGCATGAGAGACAAATCCAGCAGGCTTTTAGAAAGGCGAAGACGAATAAGAGTTATGATGAGCTTTAA 1908 45.18 MGCICSRDSSGPEDSNQKESRTGKDVNKSSVQLVAPSPSKGEDLLSEIKLSRQASKANGGSVHKTKANGGSVHRAREDDESIKPAKAKADNSSAAGRKPDIFRLASLSKVAEAEYVMAGWPSWLASVAGEAIKGWVPRRIDSFEKLEKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDRESVRFMAREIYILRKLDHPNVMKLEGLVTSKMSGSLHLVFEYMDHDLAGLAAAPGHKFSEAQIKCYVQQLMQGLEHCHSRGILHRDIKGSNLLIDDNGVLKIGDFGLATCFQPDQKQPLTSRVVTLWYRAPELLLGATEYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPLSTSFKPQHRYKSCISETFKSFPPPALALVNKLLAIEPEHRGSAAEALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKRKALAVKGHHPESVRRGLRDTKAAPTPEFNTQGDFTIKVHPIAKKMSMKYNPQGDGEPPRVAQSRYTHSTSMVHPTIASSWCKPTGASRNCADLRTQKSQMHQTVGDSATSSLTKEDGVCTKDSGMGYVQKKNRIHYSGPLVPAGGSIIEDMLKEHERQIQQAFRKAKTNKSYDEL 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4830404 4833554 - Carg28066-RA Car01g00780 141644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00780 635 ProSitePatterns Protein kinases ATP-binding region signature. 149 172 IPR017441 GO:0005524
Car01g00780 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Car01g00780 635 MobiDBLite consensus disorder prediction 70 86 - -
Car01g00780 635 MobiDBLite consensus disorder prediction 1 94 - -
Car01g00780 635 ProSiteProfiles Protein kinase domain profile. 143 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00780 635 Pfam Protein kinase domain 143 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00780 635 MobiDBLite consensus disorder prediction 51 65 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00780 Car09g01082 CCT
Car01g00780 Car09g01082 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00780 Car-Chr1:4830404 Car04g00518 Car-Chr4:2917917 0 dispersed
Car20g00013 Car-Chr20:77129 Car01g00780 Car-Chr1:4830404 7.36E-90 transposed
Car01g00780 Car-Chr1:4830404 Car09g01138 Car-Chr9:11884689 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88594 PF00069 Pkinase 2.60E-70 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00780 K08819 - csv:101208709 1085.09