Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00784 ATGGGGAGACACGGTGCGGCAACGTCGATCTACCGAGGAGTTCGCAAGCGTAAATGGGGCAAATGGGTTTCCGAGATTCGTGAACCGGGAAAGAAGACGAGAATATGGTTAGGTAGCTTCGAGACACCGGAGATGGCAGCGGCAGCCTACGACGTTGCTGCCTACCATTTCCGTGGTCGCGACGCACGTCTCAATTTCCCTAATCTTGTCGACTCTCTTCCCTTACCTCTTGGTTCTTCCTCTGATGACATCCGCCTTGCTGCTCACGAGGGAGCGTTGCGATTACGAACAACGCCGACCGTTGTGCCTGAGAGAAGTGGAACTGGTGGGTTGGGACTGGCACCGGTCACAGTGCGGTTGTCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGATTCGCCGAAGATGTGGATGCAAATGTCGTCAGAGAGCTTGGTGATGGAGGAGTATTCAAATGAGGATGAAATGTGGGAGAATATGCAGAATGATTCGCTGTGGGATCCTTAG 513 53.61 MGRHGAATSIYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPNLVDSLPLPLGSSSDDIRLAAHEGALRLRTTPTVVPERSGTGGLGLAPVTVRLSPSQIQAINESPLDSPKMWMQMSSESLVMEEYSNEDEMWENMQNDSLWDP 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5082921 5083433 + Carg26296-RA Car01g00784 141648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00784 170 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Car01g00784 170 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00784 Car-Chr1:5082921 Car09g01127 Car-Chr9:11766705 3.06E-83 dispersed
Car01g00784 Car-Chr1:5082921 Car01g00785 Car-Chr1:5099026 3.01E-49 tandem
Car01g00784 Car-Chr1:5082921 Car09g01073 Car-Chr9:9777498 1.19E-30 wgd
Car01g00784 Car-Chr1:5082921 Car09g01125 Car-Chr9:11729544 9.55E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2840 PF00847 AP2 4.20E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00784 - - csv:101207243 263.077