Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00785 ATGGAACCCACTTACAGAGGCGTTCGTAAGCGCAAATGGGGGAAATGGGTCTCGGAAATCCGCCAACCCGGCAAAAAAACCCGAATCTGGCTCGGCAGTTACGACTTCCCGGCGATGGCCGCTGCCGCATACGACGTCGCCGCACTCCACCTCCGTGGACGTAACGCCCAGCTCAACTTCCCCGAGCTGGCCGAGACCTTCCCCCGGCCTGAGAGTTCGAGGGCAGAGGACATTCAGAGTGCAGCGCAGATGGCTGCATTGCGAATGAGGAACCCGGTCGGGGCGGCGCCAGTTAGAGTGGGGCTGTCGGAGAGTGAGATACAGGCGATAAATGAGTCGCCGTTGGATTCGCCGAGGACGATGTGGATGCAGATGGCGGCGGAGGCGGAGGCAGTTTGTTTGGAGGAAGAGTCGGGGTTTGATGAGGGGGAGGATAACATCACGACGCATCATTCCATATGGGATTCTTGA 471 59.24 MEPTYRGVRKRKWGKWVSEIRQPGKKTRIWLGSYDFPAMAAAAYDVAALHLRGRNAQLNFPELAETFPRPESSRAEDIQSAAQMAALRMRNPVGAAPVRVGLSESEIQAINESPLDSPRTMWMQMAAEAEAVCLEEESGFDEGEDNITTHHSIWDS 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5099026 5099496 + Carg26297-RA Car01g00785 141649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00785 156 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Car01g00785 156 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00785 Car-Chr1:5099026 Car09g01125 Car-Chr9:11729544 1.40E-61 dispersed
Car01g00784 Car-Chr1:5082921 Car01g00785 Car-Chr1:5099026 3.01E-49 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2841 PF00847 AP2 2.30E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00785 - - cmax:111471982 288.5