Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00792 ATGGCGTTGAATATGAAAACTCTCACCCAAGCCTTGGCCAAGACCGCCGCGGTGATCGAGAAAACCGTTCAGACCACCGTCCAGGAGGTCACCGGACCCAGGCCCCTCCAGGATTACGATCTTATCGATCAGATCGGCTCCGCCGGTCCTGGCATGGCTTGGAAATTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGTCTCAGCAATATCCCGCTGTTTGCGTATGGGTTTTGGATAAGAGGGTTCTATCGGAGGCTAGGGCTCGCGCGGGGTTGTCGAAGTCTGCTGAGGATTCGTTTTTGGATCTGATTCGATCCGATGCGGGGCGGTTGGTGAAGCTGAGGCATCCGGGAGTGGTTCATGTGGTGCAGGCGTTGGATGAGAATAAGAATGCCATGGCTATGGTTACCGAGCCGCTGTTTGCTTCGGTGGCAAATGTTGTTGGGAATCTGGAGAATGTTGCTAAGGTTCCTAATGAGCTCAAAGATTTGGAAATGGGATTACTGGAAATAAAGCATGGTTTGCTTCAGATAGCAGAATCTTTGAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTCCTGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTGGCTTTGCAATTCCAGTCGATCAGACTTCGAGTGACATGACTGCCATGCAGGGTTTCCACTACTCAGAGTATGACGTTGAAGATTCTGTGCTACCTCTTCAGCCATCGCTGAATTATACTGCTCCTGAGTTGGTCAAAAGTAGATCATCTTTGGCTGGAAGTTCCTCTGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGGTTGCTAGAAAGCCTCTGTTTGACTGCTTCAACAATGTTAAAATGTACATGAATTCCTTAACTTACCTGTCAACTGAGTCGTTTGCTTCAATTCCTCGGGAGTTAGTTCCTGATTTGCAAAGAATGCTCTCATCAAATGAGTCTCTCAGGCCAACAGCAATGACGTTCACAGATTCCCCATTTTTTCGGGATGACACAAGGCTGCGTGCTATTCGCTTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGACTTCTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTCTGTGCAGAATTACGTAATATGGTTATACAACCTATAATTCTTCCCATGGTATTCACAATAGCAGAGTCTCAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGACACATTGTTGCTGCTTGTGAAGCGTGCCGATCTTATTATTAACAAGACCAATCAAGAAGCATTAATAACAAGTGTCCTGCCATTGATTATTCGGGCTTATGATGATAATGATGCTCGCATACAAGAGGAAGGTCTGAGAAAATCAGTTTCCCTTGCCAAGCAACTTGATACACAGTTAGTGAAACAAACAATTTTGCCTCGTGTTCACACCTTAGCTCTAAAGACGACAGTTGCTGCGGTCAGAGTCAATGCTTTGCTCTGCTTTGGAGAATTGGTTCCGACGCTTGATAAACATGCAGTTCTAGAAATCTTGCAAACAATCCAACGTTGTACAGCTGTTGACCGTTCTGCTCCTACTCTCATGTGTACCCTTGGGGTAGCAAATTCAATCCTTAAGCAGTATGGAATTGAATTTGTTGCGGAGCATGTTCTTCCTTTACTCGCACCTCTTCTTACAGCCCAACAATTAAATGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGACATTCTCAGGAAAATAGAAGAGAAAAGAGGAGTCACTGTTTCTGATTCTGGAGTATCAGGGATGAAACCCTCTCTGATTTCTAATGGCTCACAGTCACAATCAACAAGTGATGCCTCGGTTCCAACAATAAAAAGTCGACCTGCTTGGGACGAAGATTGGGGCCCGACTTCTAAGACACCTGCATCCTCACAAAGTTCTACTGGCAATGTCTTGTCTGCTCCTTTTGTTCTTGGTGGTCAATCCATAGCTGGAAATTCTATACAAACAAATTCTGTTGTGACGACATCTCTGTCTAGTAATCAAACTGTTGCATCCTGCCTTCCAGTTGATATTGAGTGGCCTCCTCAGAACTCTACCAGTAGTACACCCATAATAGCTGATTCTGGGATGCAAGCAACTACAGGATCATCATCCACTTCAAGCTTGGATGGCGAGGACCCTTTTGCTGACTGGCCTCCACGTCCTAGTGGATCATTAGCAGGTGCATCAGGAGCTTCGAACAACGGAGTGGTCGGACCATCCAAGAACAAATATGGAACTGGTTCATCCATGACTACACCGAACAGTTTGAACTTTCAAACAAACGATAATGCTAGTTGGACCCTCAACAACCAAAATACTAGTGAACCAATGATACAAAATCAAGGAACTTCGACTTTCAATTCAAGCAGTCCGGGGAGTGGAGGCATCAATTCCCTAAATTCTATCGGATTCCAGAAGCAAAATCAGGGAATACCATCCCAGCTTACTTATGATGCCGACAAGAAATCCACTGATCTTGGATCCATATTTGCGCCAAGTAAGAGTGATCATAATATTGCACCTAGACTTGCCCCACCCCCCACAACTGCTATTGGTAGAGGAAGAGGAAGAGGGAGGGGGGTTTCCTCAACACTTCGTTCTACTCAAAACAAATCATCATCTGAGCAACCTCCACTGATGGATTTGCTGTAG 2787 44.74 MALNMKTLTQALAKTAAVIEKTVQTTVQEVTGPRPLQDYDLIDQIGSAGPGMAWKLYSAKARDSSRSQQYPAVCVWVLDKRVLSEARARAGLSKSAEDSFLDLIRSDAGRLVKLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVVGNLENVAKVPNELKDLEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFGFAIPVDQTSSDMTAMQGFHYSEYDVEDSVLPLQPSLNYTAPELVKSRSSLAGSSSDIFSFGCLAYHLVARKPLFDCFNNVKMYMNSLTYLSTESFASIPRELVPDLQRMLSSNESLRPTAMTFTDSPFFRDDTRLRAIRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRYKVLPPLCAELRNMVIQPIILPMVFTIAESQDKHDFELSTLPSLVPVLSTASGDTLLLLVKRADLIINKTNQEALITSVLPLIIRAYDDNDARIQEEGLRKSVSLAKQLDTQLVKQTILPRVHTLALKTTVAAVRVNALLCFGELVPTLDKHAVLEILQTIQRCTAVDRSAPTLMCTLGVANSILKQYGIEFVAEHVLPLLAPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVTVSDSGVSGMKPSLISNGSQSQSTSDASVPTIKSRPAWDEDWGPTSKTPASSQSSTGNVLSAPFVLGGQSIAGNSIQTNSVVTTSLSSNQTVASCLPVDIEWPPQNSTSSTPIIADSGMQATTGSSSTSSLDGEDPFADWPPRPSGSLAGASGASNNGVVGPSKNKYGTGSSMTTPNSLNFQTNDNASWTLNNQNTSEPMIQNQGTSTFNSSSPGSGGINSLNSIGFQKQNQGIPSQLTYDADKKSTDLGSIFAPSKSDHNIAPRLAPPPTTAIGRGRGRGRGVSSTLRSTQNKSSSEQPPLMDLL 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5174317 5192426 + Carg26288-RA Car01g00792 141656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00792 928 Pfam Protein kinase domain 105 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00792 928 MobiDBLite consensus disorder prediction 771 848 - -
Car01g00792 928 MobiDBLite consensus disorder prediction 725 848 - -
Car01g00792 928 MobiDBLite consensus disorder prediction 906 922 - -
Car01g00792 928 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g00792 928 MobiDBLite consensus disorder prediction 725 755 - -
Car01g00792 928 MobiDBLite consensus disorder prediction 633 653 - -
Car01g00792 928 MobiDBLite consensus disorder prediction 872 928 - -
Car01g00792 928 MobiDBLite consensus disorder prediction 633 679 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00792 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 1486.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g00792 Car09g01114 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00792 Car-Chr1:5174317 Car05g00706 Car-Chr5:4819691 1.34E-20 dispersed
Car01g00792 Car-Chr1:5174317 Car09g01114 Car-Chr9:11515265 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88595 PF00069 Pkinase 4.60E-25 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car01g00792 Car_Chr01 FPKM 6.709465 7.489688 7.822776 7.976313 14.404956 12.378688 15.566645 7.440688 8.026879 8.475901