Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00804 ATGGCTTACGACCATTTGGATCCATCAAAAGGCTATTCAGTTGCTTCTGGGCCAGGTCCAGCTTCAAAGCCTGCATCTGAAATGAAGATCTATCAGTTCTTTGTTTTCTGTATTCCAATTGTTGTCACTTTCATTATTCTCCTCCTTTTCTATCTCCTTTATCTTCGTCGCCGAAGGGCTGATTGGAGCTCCATCCGAATGCGAACCTCTACTGCAGTCAACAACAATGACATCTCAACAGCTGAAGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCCATTATTGTGTACAATGAGTCATTCTTTGTCACTGACACACAATGTTCGGTCTGTTTAGGGGAATACAAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGAATGCATTGATCATTGGCTATCCAACCACACTACTTGCCCGCTCTGTCGCCACTCCGTCCTTTCTCCGTTGCCTCAAACACCACATGTTCAGATCGATATGAGACTCGAGTCATCGAATGAACAACAACACGAAGAAGCAACTCCCCCAGACAGTAATCAAGCTTGTCAACATACAACATCTCCGGTGTAA 594 43.94 MAYDHLDPSKGYSVASGPGPASKPASEMKIYQFFVFCIPIVVTFIILLLFYLLYLRRRRADWSSIRMRTSTAVNNNDISTAEVGLKKEFREMLPIIVYNESFFVTDTQCSVCLGEYKTEDKLQKIPSCGHVFHLECIDHWLSNHTTCPLCRHSVLSPLPQTPHVQIDMRLESSNEQQHEEATPPDSNQACQHTTSPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5301655 5303061 + Carg23027-RA Car01g00804 141668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00804 197 Pfam Ring finger domain 108 151 IPR001841 -
Car01g00804 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Car01g00804 197 MobiDBLite consensus disorder prediction 173 197 - -
Car01g00804 197 MobiDBLite consensus disorder prediction 179 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00804 Car09g01077 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00804 Car-Chr1:5301655 Car02g00670 Car-Chr2:5007246 7.15E-23 dispersed
Car01g00804 Car-Chr1:5301655 Car09g01077 Car-Chr9:9999877 1.37E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00804 K19039 - csv:101219324 322.783