Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00805 ATGTTGAAGCTACAGCGATGGTTGTCCAGGAACCAGCTATTTGAACAAGTTGTGTGTAAGAAAGCTGGTCATGTTGACCATGCTTTTGGGTCACATCCTTTCTCATCTGGAGTCGGCATTCCAGGACAAAAGTTTACTCATACAGTCCCAAAGAATGAAAATGACCGAGTTTATGCTGCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCAATGTTTCCTTGTCTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGTTCAATACTGCTGACGTTCTTTCCTGCCATAGGGGAGCGCAAGTATGATTGGACAAAAAAACAGTTCTTTTCATTGAACCCAACAGAGGTTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTGATAACACGCAAAGTACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACAGCTTGCAGTTTTGCCCTGCCTCACATTCTTGGTTGGGATCGGCTGACAAAACCCAGTCTTGGCATGGAAAAGGGTTTTCAACCAAACAAGGTGAATCGTGAAGGATTGAGTTTAGAGTGGAAAAGATGA 720 42.64 MLKLQRWLSRNQLFEQVVCKKAGHVDHAFGSHPFSSGVGIPGQKFTHTVPKNENDRVYAAYNVYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLNPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVDNTQSTKEFLSVPFTAGEFSVMKTACSFALPHILGWDRLTKPSLGMEKGFQPNKVNREGLSLEWKR 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5303055 5321382 - Carg23028-RA Car01g00805 141669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00805 239 Pfam Whirly transcription factor 63 197 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00805 Car-Chr1:5303055 Car12g00685 Car-Chr12:4735071 1.00E-47 dispersed
Car01g00805 Car-Chr1:5303055 Car05g00820 Car-Chr5:8087535 2.04E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2842 PF08536 Whirly 3.80E-51 CL0609 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00805 - - csv:101219085 362.073